Factsheet for Solyc06g064550.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 11

Predictors

GFP

MS/MS

Papers

plastid: 20363867
plastid: 22908117

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

msms PMID: 20363867 doi

C Barsan, P Sanchez-Bel, C Rombaldi, I Egea, M Rossignol, M Kuntz, M Zouine, A Latché, M Bouzayen, JC Pech

Université de Toulouse, INP-ENSA Toulouse, Génomique et Biotechnologie des Fruits, Avenue de l'Agrobiopole BP 32607, F-31326 Castanet-Tolosan, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400083218	Potato	plastid	97.39	97.07
Solyc11g040390.1.1	Tomato	plastid	71.93	80.71
VIT_18s0001g03660.t01	Wine grape	mitochondrion, plastid	73.88	77.96
GSMUA_Achr5P01800_001	Banana	vacuole	61.15	76.57
KRH58834	Soybean	endoplasmic reticulum, plastid	74.54	74.78
KRH42738	Soybean	nucleus, plastid	74.43	74.67
Solyc11g040380.1.1	Tomato	plastid	9.14	73.04
AT4G19710.2	Thale cress	plastid	72.47	72.71
CDY59140	Canola	plastid	72.25	72.25
Bra013425.1-P	Field mustard	plastid	72.36	72.05
CDY51915	Canola	plastid	71.93	71.69
KRG97357	Soybean	cytoskeleton, cytosol, peroxisome	49.62	70.81
GSMUA_Achr4P28160_001	Banana	plastid	71.16	70.25
Os08t0342400-02	Rice	plastid	69.97	69.82
Os09t0294000-01	Rice	plasma membrane	69.1	69.4
EER96488	Sorghum	plastid	68.55	68.7
TraesCS5A01G177400.1	Wheat	golgi	68.12	68.42
TraesCS5D01G181600.4	Wheat	plastid	67.79	68.09
Zm00001d019988_P001	Maize	plastid	67.9	68.05
TraesCS5B01G174600.1	Wheat	plastid	67.68	67.98
HORVU5Hr1G053950.1	Barley	plastid	67.57	66.42
Zm00001d050134_P001	Maize	plastid	41.46	61.45
Zm00001d005535_P002	Maize	plastid	60.72	52.0
GSMUA_Achr5P01810_001	Banana	plastid	11.97	43.48
Solyc11g072010.1.1	Tomato	mitochondrion	13.49	33.07
Solyc01g005240.2.1	Tomato	plastid	15.78	25.66

Protein Annotations

KEGG:00260+1.1.1.3	KEGG:00260+2.7.2.4	KEGG:00261+2.7.2.4	KEGG:00270+1.1.1.3	KEGG:00270+2.7.2.4	KEGG:00300+1.1.1.3
KEGG:00300+2.7.2.4	Gene3D:3.30.2130.10	Gene3D:3.30.360.10	Gene3D:3.40.1160.10	Gene3D:3.40.50.720	MapMan:4.1.2.2.4
InterPro:ACT_dom	InterPro:AceGlu_kinase-like_sf	InterPro:Asp/Glu/Uridylate_kinase	InterPro:Asp/hSer_DH_NAD-bd	InterPro:Asp_kinase	InterPro:Aspartate_kinase_CS
InterPro:CASTOR_ACT_dom	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0004072	GO:GO:0004412
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006520
GO:GO:0008150	GO:GO:0008152	GO:GO:0008652	GO:GO:0009058	GO:GO:0009067	GO:GO:0009090
GO:GO:0009536	GO:GO:0009570	GO:GO:0009987	GO:GO:0016301	GO:GO:0016310	GO:GO:0016491
GO:GO:0016740	GO:GO:0050661	GO:GO:0055114	InterPro:HDH_CS	InterPro:HDH_cat	InterPro:IPR002912
InterPro:IPR036393	UniProt:K4C785	InterPro:NAD(P)-bd_dom_sf	PFAM:PF00696	PFAM:PF00742	PFAM:PF01842
PFAM:PF03447	PFAM:PF13840	ScanProsite:PS00324	ScanProsite:PS01042	PFscan:PS51671	PANTHER:PTHR43070
PANTHER:PTHR43070:SF2	SUPFAM:SSF51735	SUPFAM:SSF53633	SUPFAM:SSF55021	SUPFAM:SSF55347	EnsemblPlantsGene:Solyc06g064550.2
EnsemblPlants:Solyc06g064550.2.1	TIGRFAMs:TIGR00657	UniParc:UPI0002766EF7	SEG:seg	:	:

Description

No Description!

Coordinates

chr6:+:40219668..40229833

Molecular Weight (calculated)

100731.0 Da

IEP (calculated)

5.953

GRAVY (calculated)

-0.090

Length

919 amino acids

Sequence
(BLAST)

001: MAFSSSSISP CCSSKFSSNS YLPETYLKAK VKKIDAFNSN THTFPLLQSI NSKWERGELF QFRIRAAVTT EEYLLDGSTE NNQLLKGDSW SVHKFGGTCV
101: GNSERIRNVA DVIIQDQSEG KLVVVSAMSK VTDMMYDLIH KAQSRDESYL TALDAVLEKH KLTAMDLLDG DELASFLSRI HHDINNLKAM LRAIYIAGHA
201: TESFTDFVAG HGELWSAQLL ASVVRMSGVE SKWMDTREVL VVNPMGSNQV DPDYLKSGER LEKWYSKNPS MTIIATGFIA STPQDIPTTL KRDGSDFSAA
301: IMGALFKARQ VTIWTDVDGV YSADPRKVSE AVILERLSYQ EAWEMSYFGA NVLHPRTIVP VMQYDIPIII KNIFNLAAPG TRICRSTDNE FVDGQISESP
401: VKGFATIDKL ALVNVEGTGM TGVPGTASDI FGVVKSVGAN VIMISQASSE HSICFAVPEK EVKAVADALE SRFGQALSSG RLSQISVIPG CSILAAVGQR
501: MASSSGVSAT FFSALAKANI NIRAIAQGCS EYNVTVVVKQ EDCVRALRAV HSRFYLTRTA IAVGIVGPGL IGGTLLDQLK DQSAVLKEKF NIDLRVMGII
601: GKNSMLLSDS GIDLSKWKEL QNQDGEMADL NKFVQHVSEN YFIPNSVIVD CTADSHIASH YYDWLHRGIH VVTPNKKANS GPLDRYLKLR DLQRQSYTHY
701: FYEATVGAGL PIISTLRGLL ETGDKILRIE GIFSGTLSYI FNNFMGTKAF SQVVKEAKEA GYTEPDPRDD LSGTDVARKV IILARESGLN LELSDIPVQS
801: LVPEPLRATA SAEDFLLDLP KFDHELSKQR QEAEDEEEVL RYVGVVDVVN GKGAVELRRY NKDHPFAQLS GSDNIIAFTT ERYCKQPLIV RGPGAGAEVT
901: AGGIFSDILR LASYLGAPS

Best Arabidopsis Sequence Match ( AT1G31230.1 )
(BLAST)

001: MPVVSLAKVV TSPAVAGDLA VRVPFIYGKR LVSNRVSFGK LRRRSCIGQC VRSELQSPRV LGSVTDLALD NSVENGHLPK GDSWAVHKFG GTCVGNSERI
101: KDVAAVVVKD DSERKLVVVS AMSKVTDMMY DLIHRAESRD DSYLSALSGV LEKHRATAVD LLDGDELSSF LARLNDDINN LKAMLRAIYI AGHATESFSD
201: FVVGHGELWS AQMLAAVVRK SGLDCTWMDA RDVLVVIPTS SNQVDPDFVE SEKRLEKWFT QNSAKIIIAT GFIASTPQNI PTTLKRDGSD FSAAIMSALF
301: RSHQLTIWTD VDGVYSADPR KVSEAVVLKT LSYQEAWEMS YFGANVLHPR TIIPVMKYDI PIVIRNIFNL SAPGTMICRQ IDDEDGFKLD APVKGFATID
401: NLALVNVEGT GMAGVPGTAS AIFSAVKEVG ANVIMISQAS SEHSVCFAVP EKEVKAVSEA LNSRFRQALA GGRLSQIEII PNCSILAAVG QKMASTPGVS
501: ATFFNALAKA NINIRAIAQG CSEFNITVVV KREDCIRALR AVHSRFYLSR TTLAVGIIGP GLIGGTLLDQ IRDQAAVLKE EFKIDLRVIG ITGSSKMLMS
601: ESGIDLSRWR ELMKEEGEKA DMEKFTQYVK GNHFIPNSVM VDCTADADIA SCYYDWLLRG IHVVTPNKKA NSGPLDQYLK IRDLQRKSYT HYFYEATVGA
701: GLPIISTLRG LLETGDKILR IEGIFSGTLS YLFNNFVGTR SFSEVVAEAK QAGFTEPDPR DDLSGTDVAR KVTILARESG LKLDLEGLPV QNLVPKPLQA
801: CASAEEFMEK LPQFDEELSK QREEAEAAGE VLRYVGVVDA VEKKGTVELK RYKKDHPFAQ LSGADNIIAF TTKRYKEQPL IVRGPGAGAQ VTAGGIFSDI
901: LRLAFYLGAP S

Arabidopsis Description

AKHSDH1Bifunctional aspartokinase/homoserine dehydrogenase 1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9SA18]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.