Factsheet for Solyc11g040380.1.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

extracellular 3
endoplasmic reticulum 3
vacuole 3
plasma membrane 3
golgi 3
plastid 2
cytosol 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, plastid, secretory
BaCelLo:	secretory
EpiLoc:	plastid
MultiLoc:	cytosol
Plant-mPloc:	plastid
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	cytosol

plastid: 22908117

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc06g064550.2.1	Tomato	plastid	73.04	9.14
Solyc11g072010.1.1	Tomato	mitochondrion	27.83	8.53
GSMUA_AchrUn_...	Banana	vacuole	4.35	3.76
HORVU5Hr1G121650.2	Barley	cytosol	11.3	3.27
HORVU5Hr1G121700.2	Barley	cytosol	6.96	2.74
Solyc01g005240.2.1	Tomato	plastid	11.3	2.3
GSMUA_Achr8P09140_001	Banana	cytosol	9.57	2.26
TraesCS5B01G550800.1	Wheat	nucleus	19.13	2.14
KRH08407	Soybean	plastid	10.43	2.12
Os03t0850400-01	Rice	cytosol, mitochondrion, plastid	9.57	2.05
TraesCS4A01G337800.1	Wheat	plastid	9.57	1.97
Zm00001d035282_P001	Maize	mitochondrion	5.22	1.97
TraesCS5B01G547400.1	Wheat	plastid	9.57	1.97
HORVU5Hr1G121250.1	Barley	plastid	9.57	1.96
KRH06839	Soybean	plastid	9.57	1.96
KRG94687	Soybean	plastid	9.57	1.96
TraesCS5D01G487000.2	Wheat	plastid	9.57	1.96
KRH70062	Soybean	plastid	9.57	1.96
TraesCS5D01G534600.1	Wheat	plastid	9.57	1.94
Zm00001d037282_P001	Maize	plastid	2.61	1.85
AT5G14060.1	Thale cress	plastid	8.7	1.84
AT3G02020.1	Thale cress	plastid	8.7	1.79
EER93093	Sorghum	plastid	8.7	1.77
Bra035544.1-P	Field mustard	plastid	8.7	1.73
Bra006235.1-P	Field mustard	plastid	7.83	1.68
Zm00001d018301_P001	Maize	extracellular, plasma membrane	3.48	1.63
OQU88150	Sorghum	mitochondrion	7.83	1.62
KXG34945	Sorghum	mitochondrion, plastid	7.83	1.6
TraesCS3B01G475900.2	Wheat	plastid	7.83	1.6
Zm00001d005151_P004	Maize	plastid	7.83	1.59
TraesCS3D01G434800.1	Wheat	plastid	7.83	1.59
Zm00001d029179_P001	Maize	extracellular	0.87	1.59
TraesCS3A01G442100.2	Wheat	plastid	7.83	1.59
Os01t0927900-01	Rice	mitochondrion	7.83	1.58
Os07t0300900-02	Rice	plastid	7.83	1.57
Zm00001d042264_P006	Maize	mitochondrion, plastid	7.83	1.55
HORVU3Hr1G096500.10	Barley	plastid	7.83	1.55
VIT_14s0068g01190.t01	Wine grape	cytosol	8.7	1.53
Solyc11g040390.1.1	Tomato	plastid	10.43	1.47
TraesCS7B01G461700.1	Wheat	nucleus	11.3	1.28
GSMUA_AchrUn_...	Banana	plastid	2.61	1.19
Zm00001d034851_P001	Maize	plastid	3.48	0.94
GSMUA_AchrUn_...	Banana	plastid	3.48	0.93
CDX70539	Canola	mitochondrion	0.0	0.0

Protein Annotations

KEGG:00260+1.1.1.3	KEGG:00270+1.1.1.3	KEGG:00300+1.1.1.3	Gene3D:3.30.360.10	MapMan:35.1	GO:GO:0003674
GO:GO:0003824	GO:GO:0004072	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0006520	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009089	GO:GO:0009987
GO:GO:0016301	GO:GO:0016310	GO:GO:0016740	GO:GO:0055114	InterPro:HDH_cat	UniProt:K4D809
PFAM:PF00742	PANTHER:PTHR43070	PANTHER:PTHR43070:SF2	SUPFAM:SSF55347	EnsemblPlantsGene:Solyc11g040380.1	EnsemblPlants:Solyc11g040380.1.1
UniParc:UPI0002769F95	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr11:+:37735661..37736771

Molecular Weight (calculated)

12367.0 Da

IEP (calculated)

8.446

GRAVY (calculated)

0.250

Length

115 amino acids

Sequence
(BLAST)

001: MIGLWSDPIL SIYERELLAL VTAVQKRNLI CWGGVLRYVG VVDVVSGKGT VELQKYSKEH PFAQLSGSDN IIAFTTERYA KQPLIVRGPG AGAEVTAGGV
101: FSDILRLASY LGAPS

Best Arabidopsis Sequence Match ( AT1G31230.1 )
(BLAST)

001: MPVVSLAKVV TSPAVAGDLA VRVPFIYGKR LVSNRVSFGK LRRRSCIGQC VRSELQSPRV LGSVTDLALD NSVENGHLPK GDSWAVHKFG GTCVGNSERI
101: KDVAAVVVKD DSERKLVVVS AMSKVTDMMY DLIHRAESRD DSYLSALSGV LEKHRATAVD LLDGDELSSF LARLNDDINN LKAMLRAIYI AGHATESFSD
201: FVVGHGELWS AQMLAAVVRK SGLDCTWMDA RDVLVVIPTS SNQVDPDFVE SEKRLEKWFT QNSAKIIIAT GFIASTPQNI PTTLKRDGSD FSAAIMSALF
301: RSHQLTIWTD VDGVYSADPR KVSEAVVLKT LSYQEAWEMS YFGANVLHPR TIIPVMKYDI PIVIRNIFNL SAPGTMICRQ IDDEDGFKLD APVKGFATID
401: NLALVNVEGT GMAGVPGTAS AIFSAVKEVG ANVIMISQAS SEHSVCFAVP EKEVKAVSEA LNSRFRQALA GGRLSQIEII PNCSILAAVG QKMASTPGVS
501: ATFFNALAKA NINIRAIAQG CSEFNITVVV KREDCIRALR AVHSRFYLSR TTLAVGIIGP GLIGGTLLDQ IRDQAAVLKE EFKIDLRVIG ITGSSKMLMS
601: ESGIDLSRWR ELMKEEGEKA DMEKFTQYVK GNHFIPNSVM VDCTADADIA SCYYDWLLRG IHVVTPNKKA NSGPLDQYLK IRDLQRKSYT HYFYEATVGA
701: GLPIISTLRG LLETGDKILR IEGIFSGTLS YLFNNFVGTR SFSEVVAEAK QAGFTEPDPR DDLSGTDVAR KVTILARESG LKLDLEGLPV QNLVPKPLQA
801: CASAEEFMEK LPQFDEELSK QREEAEAAGE VLRYVGVVDA VEKKGTVELK RYKKDHPFAQ LSGADNIIAF TTKRYKEQPL IVRGPGAGAQ VTAGGIFSDI
901: LRLAFYLGAP S

Arabidopsis Description

AKHSDH1Bifunctional aspartokinase/homoserine dehydrogenase 1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9SA18]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.