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Tomato
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Tomato
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid

Predictor Summary:
  • plastid 11
  • peroxisome 1
Predictors GFP MS/MS Papers
Winner Takes All:plastid
Any Predictor:peroxisome, plastid
BaCelLo:plastid
ChloroP:plastid
EpiLoc:plastid
iPSORT:plastid
MultiLoc:plastid
Plant-mPloc:plastid
Predotar:plastid
PProwler:plastid
PTS1:peroxisome
TargetP:plastid
WoLF PSORT:plastid
YLoc:plastid
 plastid: 22908117
nucleus: 28394025
msms PMID: 28394025 doi
AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
msms PMID: 22908117 doi
C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech
Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
VIT_18s0001g03660.t01 Wine grape mitochondrion, plastid 77.53 72.9
Solyc06g064550.2.1 Tomato plastid 80.71 71.93
KRH58834 Soybean endoplasmic reticulum, plastid 75.58 67.58
GSMUA_Achr5P01800_001 Banana vacuole 60.44 67.44
KRH42738 Soybean nucleus, plastid 75.34 67.36
CDY59140 Canola plastid 72.89 64.96
AT4G19710.2 Thale cress plastid 72.65 64.96
Bra013425.1-P Field mustard plastid 73.14 64.9
Zm00001d050134_P001 Maize plastid 48.84 64.52
CDY51915 Canola plastid 72.53 64.43
Os08t0342400-02 Rice plastid 71.79 63.84
GSMUA_Achr4P28160_001 Banana plastid 72.41 63.7
EER96488 Sorghum plastid 70.33 62.81
Zm00001d019988_P001 Maize plastid 70.09 62.6
Os09t0294000-01 Rice plasma membrane 69.84 62.51
TraesCS5A01G177400.1 Wheat golgi 68.01 60.87
TraesCS5D01G181600.4 Wheat plastid 68.01 60.87
TraesCS5B01G174600.1 Wheat plastid 67.77 60.66
KRG97357 Soybean cytoskeleton, cytosol, peroxisome 47.25 60.09
HORVU5Hr1G053950.1 Barley plastid 67.4 59.04
Zm00001d005535_P002 Maize plastid 61.66 47.06
GSMUA_Achr5P01810_001 Banana plastid 12.45 40.32
Solyc01g005240.2.1 Tomato plastid 17.34 25.13
Solyc11g072010.1.1 Tomato mitochondrion 10.99 24.0
Solyc11g040380.1.1 Tomato plastid 1.47 10.43
Protein Annotations
KEGG:00260+1.1.1.3KEGG:00260+1.1.1.3+2.7.2.4KEGG:00260+2.7.2.4KEGG:00261+2.7.2.4KEGG:00270+1.1.1.3KEGG:00270+1.1.1.3+2.7.2.4
KEGG:00270+2.7.2.4KEGG:00300+1.1.1.3KEGG:00300+1.1.1.3+2.7.2.4KEGG:00300+2.7.2.4Gene3D:3.30.2130.10Gene3D:3.30.360.10
Gene3D:3.40.1160.10Gene3D:3.40.50.720MapMan:4.1.2.2.4InterPro:ACT_domInterPro:AceGlu_kinase-like_sfInterPro:Asp/Glu/Uridylate_kinase
InterPro:Asp/hSer_DH_NAD-bdInterPro:Asp_kinaseInterPro:Aspartate_kinase_CSInterPro:Bifunc_aspartokin/hSer_DHInterPro:CASTOR_ACT_domGO:GO:0000166
GO:GO:0003674GO:GO:0003824GO:GO:0004072GO:GO:0004412GO:GO:0005488GO:GO:0005575
GO:GO:0005622GO:GO:0005623GO:GO:0005737GO:GO:0006520GO:GO:0008150GO:GO:0008152
GO:GO:0008652GO:GO:0009058GO:GO:0009067GO:GO:0009090GO:GO:0009536GO:GO:0009570
GO:GO:0009987GO:GO:0016301GO:GO:0016310GO:GO:0016491GO:GO:0016740GO:GO:0050661
GO:GO:0055114InterPro:HDH_CSInterPro:HDH_catInterPro:IPR002912InterPro:IPR036393UniProt:K4D810
InterPro:NAD(P)-bd_dom_sfPFAM:PF00696PFAM:PF00742PFAM:PF01842PFAM:PF03447PFAM:PF13840
PIRSF:PIRSF000727ScanProsite:PS00324ScanProsite:PS01042PFscan:PS51671PANTHER:PTHR43070PANTHER:PTHR43070:SF2
SUPFAM:SSF51735SUPFAM:SSF53633SUPFAM:SSF55021SUPFAM:SSF55347EnsemblPlantsGene:Solyc11g040390.1EnsemblPlants:Solyc11g040390.1.1
TIGRFAMs:TIGR00657UniParc:UPI0002769F96SEG:seg:::
Description
No Description!
Coordinates
chr11:+:37715584..37726562
Molecular Weight (calculated)
89297.2 Da
IEP (calculated)
7.606
GRAVY (calculated)
-0.026
Length
819 amino acids
Sequence
(BLAST)
001: MAFSSPISPS YSSHLSSKHV KANKTKFSTI NKINSFPLIQ RSPFLKVDFS SQWERGKSSK FSINAAVTSK EYSLDGALEN TQLPKGDCWS VHKFGGTCVG
101: TPERIGNVAE IITADQSERK LVVVSAMSKV TDMMYDLIYK AQSRDDSYIT ALDAVREKHK LAAVDLLDGD DLASFLSKLQ DDVNNLKSML RAIYIAGHAT
201: ESFSDFVVGH GELWSAHLLS SAVRKNGVDC KWMDTREVLV VNPTSSNQVD PDYLMSEERL EKWYSKNPSK TIIATGFIAT TPQNIPTTLK RDGSDFSAAI
301: MGALLKAHQV TIWTDVDGVY SADPRKVSEA VILKTLSYQE AWEMSYFGAN VLHPRTIVPV MQYDIPIVIK NIFNLSAPGT MICRSSGNEY EDGQKLESLV
401: KGFATIDNVA LVNVEGTGMA GVPGTASAIF SAVKDVGANV IMISQASSEH SVCFAVPEKE VKAVADVLES RFGQALSAGR LSQIAVIPNC SILAAVGQRM
501: ASTPGVSATL FTALAKANIN IRAIAQGCTE YNITVVVKRE DCVRALRAVH SKFYLSRTII AVGIVGPGLI GGTLLDQLKD QTAVLKEKFN IDLRVMGITG
601: TRTMLLSESG IDLSRWRQLL SVKGEMADMN KFVHHVRGNH FIPNTVMVDC TADSDVASHY FGWLHRGIHV VTPNKKANSG PLDQYLKLRA LQRQSYTHYF
701: YEATVGAGLP IISTLRGLLE TGDKILRIEG IFSGTLSYIF NNFTGSRAFS QVVKEAKEAG YTEPDPRDDL SGTDVARKVI ILARESGLEL ELSDIPVQSL
801: VPEPLRCISG GIYAAVATI
Best Arabidopsis Sequence Match ( AT1G31230.1 )
(BLAST)
001: MPVVSLAKVV TSPAVAGDLA VRVPFIYGKR LVSNRVSFGK LRRRSCIGQC VRSELQSPRV LGSVTDLALD NSVENGHLPK GDSWAVHKFG GTCVGNSERI
101: KDVAAVVVKD DSERKLVVVS AMSKVTDMMY DLIHRAESRD DSYLSALSGV LEKHRATAVD LLDGDELSSF LARLNDDINN LKAMLRAIYI AGHATESFSD
201: FVVGHGELWS AQMLAAVVRK SGLDCTWMDA RDVLVVIPTS SNQVDPDFVE SEKRLEKWFT QNSAKIIIAT GFIASTPQNI PTTLKRDGSD FSAAIMSALF
301: RSHQLTIWTD VDGVYSADPR KVSEAVVLKT LSYQEAWEMS YFGANVLHPR TIIPVMKYDI PIVIRNIFNL SAPGTMICRQ IDDEDGFKLD APVKGFATID
401: NLALVNVEGT GMAGVPGTAS AIFSAVKEVG ANVIMISQAS SEHSVCFAVP EKEVKAVSEA LNSRFRQALA GGRLSQIEII PNCSILAAVG QKMASTPGVS
501: ATFFNALAKA NINIRAIAQG CSEFNITVVV KREDCIRALR AVHSRFYLSR TTLAVGIIGP GLIGGTLLDQ IRDQAAVLKE EFKIDLRVIG ITGSSKMLMS
601: ESGIDLSRWR ELMKEEGEKA DMEKFTQYVK GNHFIPNSVM VDCTADADIA SCYYDWLLRG IHVVTPNKKA NSGPLDQYLK IRDLQRKSYT HYFYEATVGA
701: GLPIISTLRG LLETGDKILR IEGIFSGTLS YLFNNFVGTR SFSEVVAEAK QAGFTEPDPR DDLSGTDVAR KVTILARESG LKLDLEGLPV QNLVPKPLQA
801: CASAEEFMEK LPQFDEELSK QREEAEAAGE VLRYVGVVDA VEKKGTVELK RYKKDHPFAQ LSGADNIIAF TTKRYKEQPL IVRGPGAGAQ VTAGGIFSDI
901: LRLAFYLGAP S
Arabidopsis Description
AKHSDH1Bifunctional aspartokinase/homoserine dehydrogenase 1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9SA18]
SUBAcon: [plastid]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.