Factsheet for VIT_18s0001g03660.t01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid

Predictor Summary:

cytosol 1
plastid 4
mitochondrion 4

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr5P01800_001	Banana	vacuole	67.74	80.38
KRH42738	Soybean	nucleus, plastid	83.12	79.04
KRH58834	Soybean	endoplasmic reticulum, plastid	83.12	79.04
Solyc11g040390.1.1	Tomato	plastid	72.9	77.53
KRG97357	Soybean	cytoskeleton, cytosol, peroxisome	56.49	76.4
AT4G19710.2	Thale cress	plastid	79.91	75.98
CDY59140	Canola	plastid	79.56	75.41
Bra013425.1-P	Field mustard	plastid	79.91	75.41
CDY51915	Canola	plastid	79.68	75.27
GSMUA_Achr4P28160_001	Banana	plastid	79.33	74.22
Solyc06g064550.2.1	Tomato	plastid	77.96	73.88
PGSC0003DMT400083218	Potato	plastid	78.07	73.75
EER96488	Sorghum	plastid	74.63	70.88
Os08t0342400-02	Rice	plastid	74.86	70.79
Zm00001d019988_P001	Maize	plastid	74.51	70.77
Os09t0294000-01	Rice	plasma membrane	73.82	70.27
TraesCS5A01G177400.1	Wheat	golgi	72.9	69.4
TraesCS5B01G174600.1	Wheat	plastid	72.56	69.07
TraesCS5D01G181600.4	Wheat	plastid	72.56	69.07
HORVU5Hr1G053950.1	Barley	plastid	72.68	67.7
Zm00001d050134_P001	Maize	plastid	45.01	63.23
Zm00001d005535_P002	Maize	plastid	65.79	53.4
GSMUA_Achr5P01810_001	Banana	plastid	13.2	45.45
VIT_06s0009g01460.t01	Wine grape	mitochondrion, plastid	14.58	36.29
VIT_01s0244g00140.t01	Wine grape	plastid	15.5	23.56
VIT_14s0068g01190.t01	Wine grape	cytosol	15.96	21.25
VIT_03s0097g00340.t01	Wine grape	extracellular	2.3	18.52
VIT_03s0038g02730.t01	Wine grape	plastid	2.99	16.67
VIT_03s0097g00380.t01	Wine grape	extracellular	1.38	16.67

Protein Annotations

KEGG:00260+1.1.1.3	KEGG:00260+1.1.1.3+2.7.2.4	KEGG:00260+2.7.2.4	KEGG:00261+2.7.2.4	KEGG:00270+1.1.1.3	KEGG:00270+1.1.1.3+2.7.2.4
KEGG:00270+2.7.2.4	KEGG:00300+1.1.1.3	KEGG:00300+1.1.1.3+2.7.2.4	KEGG:00300+2.7.2.4	EntrezGene:100258602	wikigene:100258602
Gene3D:3.30.2130.10	Gene3D:3.30.360.10	Gene3D:3.40.1160.10	Gene3D:3.40.50.720	MapMan:4.1.2.2.4	InterPro:ACT_dom
EMBL:AM431405	InterPro:AceGlu_kinase-like_sf	InterPro:Asp/Glu/Uridylate_kinase	InterPro:Asp/hSer_DH_NAD-bd	InterPro:Asp_kinase	InterPro:Aspartate_kinase_CS
InterPro:Bifunc_aspartokin/hSer_DH	ProteinID:CAN82421	ProteinID:CAN82421.1	InterPro:CASTOR_ACT_dom	ProteinID:CBI31250	ProteinID:CBI31250.3
UniProt:D7TL78	EMBL:FN595996	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0004072
GO:GO:0004412	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0006520	GO:GO:0008150	GO:GO:0008152	GO:GO:0008652	GO:GO:0009058	GO:GO:0009067
GO:GO:0009090	GO:GO:0009507	GO:GO:0009536	GO:GO:0009570	GO:GO:0009987	GO:GO:0016301
GO:GO:0016310	GO:GO:0016491	GO:GO:0016740	GO:GO:0050661	GO:GO:0055114	InterPro:HDH_CS
InterPro:HDH_cat	InterPro:IPR002912	InterPro:IPR036393	EntrezGene:LOC100258602	wikigene:LOC100258602	InterPro:NAD(P)-bd_dom_sf
PFAM:PF00696	PFAM:PF00742	PFAM:PF01842	PFAM:PF03447	PFAM:PF13840	PIRSF:PIRSF000727
ScanProsite:PS00324	ScanProsite:PS01042	PFscan:PS51671	PANTHER:PTHR43070	PANTHER:PTHR43070:SF2	SUPFAM:SSF51735
SUPFAM:SSF53633	SUPFAM:SSF55021	SUPFAM:SSF55347	TIGRFAMs:TIGR00657	UniParc:UPI0001BE3910	ArrayExpress:VIT_18s0001g03660
EnsemblPlantsGene:VIT_18s0001g03660	EnsemblPlants:VIT_18s0001g03660.t01	unigene:Vvi.20275	RefSeq:XP_002271525	RefSeq:XP_002271525.1	SEG:seg

Description

No Description!

Coordinates

chr18_random:+:3420460..3434033

Molecular Weight (calculated)

95603.8 Da

IEP (calculated)

6.608

GRAVY (calculated)

-0.082

Length

871 amino acids

Sequence
(BLAST)

001: MGYVCQWGRR KSSNMQLISA SVMDVSLDKS MEKVQLPKGD NWSVHKFGGT CVGTSERIKN VAEIIVKDDS ERKLVVVSAM SKVTDMMYDL IYKAQSRDDS
101: YISAVDAVLE KHRLTALDLL DGDDLASFLS RLHHDINEIK EMLRAIYIAG HASELFSDII VGHGELWSAQ MLSSVVRKKG IDCKWMDTRD VLIVNPTSAN
201: QVDPDFVESE MRLEKWFFQN PSKTIVATGF IASTPQNIPT TLKRDGSDFS AAIMGALFRA RQVTIWTDVD GVYSADPRKV AEAVILNQLS YQEAWEMSYF
301: GANVLHPRTI IPVMQYGIPI VIRNIFNLSA PGTMICRPSV DENEGNQRLE SPVKGFATID NVALINVEGT GMAGVPGTAS AIFSAVKDVG ANVIMISQAS
401: SEHSVCFAVP EKEVEAVAEA LQSRFRQALD AGRLSQVAVV PNCSILATVG QRMASTPGVS ASLFSALAKA NINIRAIAQG CSEYNITVVV KREDCIRALK
501: AVHSRFYLSR TTIAMGIIGP GLIGGTLLDQ LRDQAAVLKE DFNIDLRVMG ITGSRTMLLS DSGIDLSRWR ELIKEKGEVG DMHKFVNHVH GNHFIPNTAL
601: VDCTADSNVA SHYHEWLRKG IHVITPNKKA NSGPLDQYLK LRALQRQSYT HYFYEATVGA GLPIISTLRG LLETGDKILR IEGIFSGTLS YIFNNFKGTR
701: RFSEVVMEAK QAGYTEPDPR DDLSGTDVAR KVIILARESG LKLELADTPV QSLVPEPLRA TASADEFMQQ LPQYDEDLAK QLQDAEDAGE VLRYVGVVDV
801: VNKKGLVELR RYKNDHPFAQ LSGSDNIIAF TTARYKNQPL IVRGPGAGAQ VTAGGIFSDV LRLASYLGAP S

Best Arabidopsis Sequence Match ( AT4G19710.2 )
(BLAST)

001: MATLKPSFTV SPPNSNPIRF GSFPPQCFLR VPKPRRLILP RFRKTTGGGG GLIRCELPDF HLSATATTVS GVSTVNLVDQ VQIPKGEMWS VHKFGGTCVG
101: NSQRIRNVAE VIINDNSERK LVVVSAMSKV TDMMYDLIRK AQSRDDSYLS ALEAVLEKHR LTARDLLDGD DLASFLSHLH NDISNLKAML RAIYIAGHAS
201: ESFSDFVAGH GELWSAQMLS YVVRKTGLEC KWMDTRDVLI VNPTSSNQVD PDFGESEKRL DKWFSLNPSK IIIATGFIAS TPQNIPTTLK RDGSDFSAAI
301: MGALLRARQV TIWTDVDGVY SADPRKVNEA VILQTLSYQE AWEMSYFGAN VLHPRTIIPV MRYNIPIVIR NIFNLSAPGT IICQPPEDDY DLKLTTPVKG
401: FATIDNLALI NVEGTGMAGV PGTASDIFGC VKDVGANVIM ISQASSEHSV CFAVPEKEVN AVSEALRSRF SEALQAGRLS QIEVIPNCSI LAAVGQKMAS
501: TPGVSCTLFS ALAKANINVR AISQGCSEYN VTVVIKREDS VKALRAVHSR FFLSRTTLAM GIVGPGLIGA TLLDQLRDQA AVLKQEFNID LRVLGITGSK
601: KMLLSDIGID LSRWRELLNE KGTEADLDKF TQQVHGNHFI PNSVVVDCTA DSAIASRYYD WLRKGIHVIT PNKKANSGPL DQYLKLRDLQ RKSYTHYFYE
701: ATVGAGLPII STLRGLLETG DKILRIEGIC SGTLSYLFNN FVGDRSFSEV VTEAKNAGFT EPDPRDDLSG TDVARKVIIL ARESGLKLDL ADLPIRSLVP
801: EPLKGCTSVE EFMEKLPQYD GDLAKERLDA ENSGEVLRYV GVVDAVNQKG TVELRRYKKE HPFAQLAGSD NIIAFTTTRY KDHPLIVRGP GAGAQVTAGG
901: IFSDILRLAS YLGAPS

Arabidopsis Description

AKHSDH2Bifunctional aspartokinase/homoserine dehydrogenase 2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:O81852]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.