Factsheet for VIT_06s0009g01460.t01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid

Predictor Summary:

plastid 4
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
cytosol 1
mitochondrion 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion, plastid
Any Predictor:	cytosol, mitochondrion, plastid, secretory
BaCelLo:	plastid
iPSORT:	secretory
MultiLoc:	cytosol
Plant-mPloc:	plastid
Predotar:	mitochondrion
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc11g072010.1.1	Tomato	mitochondrion	74.86	69.87
KRG89878	Soybean	extracellular, plastid	73.43	68.35
Bra002352.1-P	Field mustard	mitochondrion	73.14	67.72
CDY16591	Canola	mitochondrion	72.29	66.93
AT5G21060.2	Thale cress	mitochondrion, plastid	72.0	66.67
CDX92414	Canola	mitochondrion	73.43	66.07
PGSC0003DMT400070475	Potato	mitochondrion	74.86	62.53
TraesCS5B01G141000.2	Wheat	plastid	66.29	61.21
TraesCS5D01G149900.1	Wheat	mitochondrion, vacuole	66.57	60.52
Os12t0125400-01	Rice	plasma membrane	66.29	60.42
Os11t0128800-01	Rice	plasma membrane	66.0	60.16
TraesCS5A01G142200.1	Wheat	plastid	66.0	60.0
Zm00001d023278_P002	Maize	extracellular, vacuole	65.71	59.13
HORVU5Hr1G045450.2	Barley	peroxisome, plastid	66.57	54.44
EES15586	Sorghum	extracellular	48.57	54.31
GSMUA_Achr8P09360_001	Banana	plastid	67.14	26.2
VIT_18s0001g03660.t01	Wine grape	mitochondrion, plastid	36.29	14.58
VIT_14s0068g01190.t01	Wine grape	cytosol	4.57	2.45
VIT_01s0244g00140.t01	Wine grape	plastid	4.0	2.44
VIT_03s0038g02730.t01	Wine grape	plastid	0.0	0.0
VIT_03s0097g00340.t01	Wine grape	extracellular	0.0	0.0
VIT_03s0097g00380.t01	Wine grape	extracellular	0.0	0.0

Protein Annotations

KEGG:00260+1.1.1.3	KEGG:00270+1.1.1.3	KEGG:00300+1.1.1.3	Gene3D:3.30.360.10	Gene3D:3.40.50.720	MapMan:35.1
InterPro:Asp/hSer_DH_NAD-bd	ProteinID:CCB49157	ProteinID:CCB49157.1	UniProt:F6HA26	EMBL:FN595504	GO:GO:0000166
GO:GO:0003674	GO:GO:0003824	GO:GO:0004072	GO:GO:0004412	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005829	GO:GO:0006520	GO:GO:0008150
GO:GO:0008152	GO:GO:0008652	GO:GO:0009058	GO:GO:0009067	GO:GO:0009082	GO:GO:0009086
GO:GO:0009088	GO:GO:0009090	GO:GO:0009097	GO:GO:0009536	GO:GO:0009570	GO:GO:0009987
GO:GO:0016301	GO:GO:0016310	GO:GO:0016491	GO:GO:0016740	GO:GO:0050661	GO:GO:0055114
InterPro:HDH_CS	InterPro:HDH_cat	InterPro:HDH_short	InterPro:NAD(P)-bd_dom_sf	PFAM:PF00742	PFAM:PF03447
PIRSF:PIRSF036497	ScanProsite:PS01042	PANTHER:PTHR43070	PANTHER:PTHR43070:SF4	SUPFAM:SSF51735	SUPFAM:SSF55347
UniParc:UPI000210A3C2	ArrayExpress:VIT_06s0009g01460	EnsemblPlantsGene:VIT_06s0009g01460	EnsemblPlants:VIT_06s0009g01460.t01	SEG:seg	:

Description

Homoserine dehydrogenase [Source:UniProtKB/TrEMBL;Acc:F6HA26]

Coordinates

chr6:-:13222264..13245304

Molecular Weight (calculated)

37617.8 Da

IEP (calculated)

6.155

GRAVY (calculated)

0.122

Length

350 amino acids

Sequence
(BLAST)

001: MKNIPVILLG CGGVGRHLLQ HIVSCRSLHA KLGVRLRVVG VSDSKSLLLA SDVFTRELDD TFLNEVSRVK LGGSSLKTLS SFGLVVVDCS ASSETMGVLN
101: QAVDLGCCIV LANKKPLTAA MDDYDKLVAH PRRIRYESTV GAGLPVIASL NRILSSGDPI RCIVACLSGT LGYVMSEVEG GKPFSQVVKD AKSLGYTEPD
201: PRDDLSGMDV ARKALILSRL LGRRVNLDSL KIESLYPEEM GPNMMSLEDF LSSGLLLLDN DIQERVQKAA LDGKVLRYVC VIEGSRTEVG LRELPKDSPL
301: GRLRGSNNIL AIYSRCYNEQ PLVIEGAGAG NDTTAAGVLA DILDIQDLFA

Best Arabidopsis Sequence Match ( AT5G21060.1 )
(BLAST)

001: MKKIPVLLMG CGGVGRHLLQ HIVSCRSLHA KMGVHIRVIG VCDSKSLVAP MDVLKEELND ELLSEVCLIK STGSALSKLG ALGGYRVVHD SELSTETEEI
101: AKLLGKSTGL AVVDCSASME TIEILMKAVD LGCCIVLANK KPVTSTLEHY DKLALHPRFI RHESTVGAGL PVIASLNRII SSGDPVHRIV GSLSGTLGYV
201: MSELEDGKPL SQVVQAAKKL GYTEPDPRDD LGGMDVARKG LILARLLGKR IIMDSIKIES LYPEEMGPGL MSVDDFLHNG IVKLDQNIEE RVKKASSKGC
301: VLRYVCVIEG SSVQVGIREV SKDSPLGRLR GSDNIVEIYS RCYKEQPLVI QGAGAGNDTT AAGVLADIID LQDLFH

Arabidopsis Description

Homoserine dehydrogenase [Source:UniProtKB/TrEMBL;Acc:F4K6Y8]
SUBAcon: [mitochondrion,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.