Factsheet for TraesCS5B01G141000.2

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

extracellular 2
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 2
peroxisome 1
mitochondrion 2
plastid 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	mitochondrion, peroxisome, plastid, secretory
iPSORT:	secretory
MultiLoc:	peroxisome
Predotar:	secretory
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5A01G142200.1	Wheat	plastid	97.63	96.1
TraesCS5D01G149900.1	Wheat	mitochondrion, vacuole	97.1	95.58
HORVU5Hr1G045450.2	Barley	peroxisome, plastid	97.36	86.22
Os11t0128800-01	Rice	plasma membrane	87.34	86.2
Os12t0125400-01	Rice	plasma membrane	86.28	85.16
Zm00001d023278_P002	Maize	extracellular, vacuole	87.07	84.83
EES15586	Sorghum	extracellular	63.85	77.32
Solyc11g072010.1.1	Tomato	mitochondrion	67.02	67.73
CDY16591	Canola	mitochondrion	66.75	66.93
Bra002352.1-P	Field mustard	mitochondrion	66.23	66.4
VIT_06s0009g01460.t01	Wine grape	mitochondrion, plastid	61.21	66.29
AT5G21060.2	Thale cress	mitochondrion, plastid	65.7	65.87
KRG89878	Soybean	extracellular, plastid	65.17	65.69
CDX92414	Canola	mitochondrion	66.23	64.52
PGSC0003DMT400070475	Potato	mitochondrion	67.28	60.86
GSMUA_Achr8P09360_001	Banana	plastid	65.44	27.65
TraesCS5B01G174600.1	Wheat	plastid	32.98	13.66
TraesCS7B01G461700.1	Wheat	nucleus	10.55	3.93
TraesCS5B01G550800.1	Wheat	nucleus	9.5	3.5
TraesCS5B01G547400.1	Wheat	plastid	4.75	3.22
TraesCS3B01G475900.2	Wheat	plastid	3.43	2.31

Protein Annotations

KEGG:00260+1.1.1.3	KEGG:00270+1.1.1.3	KEGG:00300+1.1.1.3	Gene3D:3.30.360.10	Gene3D:3.40.50.720	MapMan:35.1
InterPro:Asp/hSer_DH_NAD-bd	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0004412	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005829	GO:GO:0006520
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016491	GO:GO:0050661	GO:GO:0055114
InterPro:HDH_CS	InterPro:HDH_cat	InterPro:HDH_short	InterPro:NAD(P)-bd_dom_sf	PFAM:PF00742	PFAM:PF03447
PIRSF:PIRSF036497	ScanProsite:PS01042	PANTHER:PTHR43070	PANTHER:PTHR43070:SF4	SUPFAM:SSF51735	SUPFAM:SSF55347
EnsemblPlantsGene:TraesCS5B01G141000	EnsemblPlants:TraesCS5B01G141000.2	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr5B:+:266008007..266014716

Molecular Weight (calculated)

39976.3 Da

IEP (calculated)

5.700

GRAVY (calculated)

0.164

Length

379 amino acids

Sequence
(BLAST)

001: MSVLPVVLLG CGGVGRHLLR HIVSCRPLHA NQGVSIRVVG VADSSSLLVA DDVRASGLDD ALLNDLCSAK SAGSPLSSLL ARGHCQVFNK PEAMGKVIDA
101: ATMLGRTTGL VIVDCSATYD TVGVLKDAVN HGCCVVLANK KPLTCAYEDF KKLTSHFRQI RFESTVGAGL PVIASVTRII ASGDPVSRIV GSLSGTLGYV
201: MSELEDGKKI SEVVKTAKAL GYTEPDPRDD LSGMDVARKA LILARLLGQQ ISMENINVES LYPSELGPEV MSTTDFLESG LAKLDETIEE RVKAASLRGN
301: VLRYVCVIGS TGCQVGLQEV PKDSALGRLR GSDNVVEIYS RCYESSPLVI QGAGAGNDTT AAGVLADIID LQDLFQTRA

Best Arabidopsis Sequence Match ( AT5G21060.1 )
(BLAST)

001: MKKIPVLLMG CGGVGRHLLQ HIVSCRSLHA KMGVHIRVIG VCDSKSLVAP MDVLKEELND ELLSEVCLIK STGSALSKLG ALGGYRVVHD SELSTETEEI
101: AKLLGKSTGL AVVDCSASME TIEILMKAVD LGCCIVLANK KPVTSTLEHY DKLALHPRFI RHESTVGAGL PVIASLNRII SSGDPVHRIV GSLSGTLGYV
201: MSELEDGKPL SQVVQAAKKL GYTEPDPRDD LGGMDVARKG LILARLLGKR IIMDSIKIES LYPEEMGPGL MSVDDFLHNG IVKLDQNIEE RVKKASSKGC
301: VLRYVCVIEG SSVQVGIREV SKDSPLGRLR GSDNIVEIYS RCYKEQPLVI QGAGAGNDTT AAGVLADIID LQDLFH

Arabidopsis Description

Homoserine dehydrogenase [Source:UniProtKB/TrEMBL;Acc:F4K6Y8]
SUBAcon: [mitochondrion,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.