Factsheet for Os12t0125400-01

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

plastid 4
mitochondrion 3
extracellular 1
endoplasmic reticulum 1
vacuole 2
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	mitochondrion, plastid, secretory
BaCelLo:	plastid
iPSORT:	plastid
MultiLoc:	mitochondrion
Plant-mPloc:	plastid
Predotar:	secretory
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	vacuole

plasma membrane: 27800704

msms PMID: 27800704 doi

J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu

Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os11t0128800-01	Rice	plasma membrane	97.66	97.66
TraesCS5B01G141000.2	Wheat	plastid	85.16	86.28
Zm00001d023278_P002	Maize	extracellular, vacuole	87.24	86.12
TraesCS5A01G142200.1	Wheat	plastid	84.9	84.68
TraesCS5D01G149900.1	Wheat	mitochondrion, vacuole	84.64	84.42
EES15586	Sorghum	extracellular	65.1	79.87
HORVU5Hr1G045450.2	Barley	peroxisome, plastid	85.16	76.4
Solyc11g072010.1.1	Tomato	mitochondrion	65.62	67.2
VIT_06s0009g01460.t01	Wine grape	mitochondrion, plastid	60.42	66.29
Bra002352.1-P	Field mustard	mitochondrion	64.06	65.08
CDY16591	Canola	mitochondrion	64.06	65.08
KRG89878	Soybean	extracellular, plastid	63.54	64.89
AT5G21060.2	Thale cress	mitochondrion, plastid	63.54	64.55
CDX92414	Canola	mitochondrion	64.06	63.24
PGSC0003DMT400070475	Potato	mitochondrion	65.89	60.38
GSMUA_Achr8P09360_001	Banana	plastid	64.58	27.65
Os08t0342400-02	Rice	plastid	33.59	14.01
Os09t0294000-01	Rice	plasma membrane	33.07	13.88
Os03t0850400-01	Rice	cytosol, mitochondrion, plastid	4.17	2.98
Os07t0300900-02	Rice	plastid	3.65	2.43
Os01t0927900-01	Rice	mitochondrion	3.12	2.11

Protein Annotations

KEGG:00260+1.1.1.3	KEGG:00270+1.1.1.3	KEGG:00300+1.1.1.3	Gene3D:3.30.360.10	Gene3D:3.40.50.720	MapMan:35.1
EntrezGene:4351381	ProteinID:ABA96341.1	InterPro:Asp/hSer_DH_NAD-bd	ProteinID:BAF29063.1	ProteinID:BAT15688.1	ProteinID:EEE52681.1
GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0004072	GO:GO:0004412	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006520	GO:GO:0008150
GO:GO:0008152	GO:GO:0008652	GO:GO:0009058	GO:GO:0009067	GO:GO:0009082	GO:GO:0009086
GO:GO:0009088	GO:GO:0009090	GO:GO:0009097	GO:GO:0009536	GO:GO:0009570	GO:GO:0009987
GO:GO:0016301	GO:GO:0016310	GO:GO:0016491	GO:GO:0016740	GO:GO:0050661	GO:GO:0055114
InterPro:HDH_CS	InterPro:HDH_cat	InterPro:HDH_short	InterPro:NAD(P)-bd_dom_sf	EnsemblPlantsGene:Os12g0125400	EnsemblPlants:Os12t0125400-01
PFAM:PF00742	PFAM:PF03447	PIRSF:PIRSF036497	ScanProsite:PS01042	PANTHER:PTHR43070	PANTHER:PTHR43070:SF4
UniProt:Q2QYB7	SUPFAM:SSF51735	SUPFAM:SSF55347	UniParc:UPI0000681B19	RefSeq:XP_015620410.1	SEG:seg

Description

Similar to Homoserine dehydrogenase-like protein. (Os12t0125400-01)

Coordinates

chr12:-:1216713..1220517

Molecular Weight (calculated)

40847.3 Da

IEP (calculated)

6.362

GRAVY (calculated)

0.088

Length

384 amino acids

Sequence
(BLAST)

001: MAAPVRSVLP VVLLGCGGVG RHLLRHILSC RPLHANQGVA IRVLGVADSS SLLVADDLHS NGFDDALLAD LCAAKSAGSP LSSLLSRGQC QLFNNPEARR
101: KVIDTASVLG KTTGLVLVDC SATYDTVGML KDAVDRGCCV VLANKKPLTC AYEDFEKLVS NFRRMRFEST VGAGLPVIAS VTRIIASGDP VSRIVGSLSG
201: TLGYVMSELE DGKRFSEVVK TAKSLGYTEP DPRDDLSGMD VARKALILAR LLGQRISMEN INVESLYPSE FGPDAMSTKD FLESGLVQLD KSIEERVKAA
301: SLKGNVLRYV CKIESTGCQV GLEELPKNSA LGRLRGSDNV VEIYSRCYES APLVIQGAGA GNDTTAAGVL ADILDLQDLF HKTA

Best Arabidopsis Sequence Match ( AT5G21060.1 )
(BLAST)

001: MKKIPVLLMG CGGVGRHLLQ HIVSCRSLHA KMGVHIRVIG VCDSKSLVAP MDVLKEELND ELLSEVCLIK STGSALSKLG ALGGYRVVHD SELSTETEEI
101: AKLLGKSTGL AVVDCSASME TIEILMKAVD LGCCIVLANK KPVTSTLEHY DKLALHPRFI RHESTVGAGL PVIASLNRII SSGDPVHRIV GSLSGTLGYV
201: MSELEDGKPL SQVVQAAKKL GYTEPDPRDD LGGMDVARKG LILARLLGKR IIMDSIKIES LYPEEMGPGL MSVDDFLHNG IVKLDQNIEE RVKKASSKGC
301: VLRYVCVIEG SSVQVGIREV SKDSPLGRLR GSDNIVEIYS RCYKEQPLVI QGAGAGNDTT AAGVLADIID LQDLFH

Arabidopsis Description

Homoserine dehydrogenase [Source:UniProtKB/TrEMBL;Acc:F4K6Y8]
SUBAcon: [mitochondrion,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.