Factsheet for TraesCS5D01G149900.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, vacuole

Predictor Summary:

extracellular 2
endoplasmic reticulum 2
vacuole 3
plasma membrane 2
golgi 2
mitochondrion 3
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion, vacuole
Any Predictor:	mitochondrion, plastid, secretory
iPSORT:	secretory
MultiLoc:	mitochondrion
Predotar:	secretory
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	vacuole

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5A01G142200.1	Wheat	plastid	98.18	98.18
TraesCS5B01G141000.2	Wheat	plastid	95.58	97.1
HORVU5Hr1G045450.2	Barley	peroxisome, plastid	96.36	86.68
Os11t0128800-01	Rice	plasma membrane	85.19	85.42
Os12t0125400-01	Rice	plasma membrane	84.42	84.64
Zm00001d023278_P002	Maize	extracellular, vacuole	84.68	83.8
EES15586	Sorghum	extracellular	61.82	76.04
Solyc11g072010.1.1	Tomato	mitochondrion	65.97	67.73
CDY16591	Canola	mitochondrion	65.97	67.2
Bra002352.1-P	Field mustard	mitochondrion	65.45	66.67
VIT_06s0009g01460.t01	Wine grape	mitochondrion, plastid	60.52	66.57
AT5G21060.2	Thale cress	mitochondrion, plastid	64.68	65.87
KRG89878	Soybean	extracellular, plastid	64.16	65.69
CDX92414	Canola	mitochondrion	65.45	64.78
PGSC0003DMT400070475	Potato	mitochondrion	66.75	61.34
GSMUA_Achr8P09360_001	Banana	plastid	64.94	27.87
TraesCS5D01G181600.4	Wheat	plastid	32.47	13.66
TraesCS5D01G487000.2	Wheat	plastid	4.68	3.2
TraesCS5D01G534600.1	Wheat	plastid	4.68	3.18
TraesCS3D01G434800.1	Wheat	plastid	3.38	2.3

Protein Annotations

KEGG:00260+1.1.1.3	KEGG:00270+1.1.1.3	KEGG:00300+1.1.1.3	Gene3D:3.30.360.10	Gene3D:3.40.50.720	MapMan:35.1
InterPro:Asp/hSer_DH_NAD-bd	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0004412	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005829	GO:GO:0006520
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016491	GO:GO:0050661	GO:GO:0055114
InterPro:HDH_CS	InterPro:HDH_cat	InterPro:HDH_short	InterPro:NAD(P)-bd_dom_sf	PFAM:PF00742	PFAM:PF03447
PIRSF:PIRSF036497	ScanProsite:PS01042	PANTHER:PTHR43070	PANTHER:PTHR43070:SF4	SUPFAM:SSF51735	SUPFAM:SSF55347
EnsemblPlantsGene:TraesCS5D01G149900	EnsemblPlants:TraesCS5D01G149900.1	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr5D:-:238704727..238709474

Molecular Weight (calculated)

40635.0 Da

IEP (calculated)

5.449

GRAVY (calculated)

0.158

Length

385 amino acids

Sequence
(BLAST)

001: MPQAQARAVL PVVLLGCGGV GRHLLRHIVS CRSLHANQGV AIRVVGVADS SSLLVADDVR ASGLDDALLN DLCSAKSAGS PLSSLLARGH CQVFNKPEAM
101: GKVIDAATML GRTTGLVIVD CSATYDTVGV LKDAVDHGCC VVLANKKPLT CAYEDFKKLT SHFRQIRFES TVGAGLPVIA SVTRIIASGD PVSRIVGSLS
201: GTLGYVMSEL EDGNFFSEVV KTAKALGYTE PDPRDDLSGM DVARKALILA RLLGQQISME NINVESLYPS ELGPEVMSTT DFLESGLAKL DETIEEKVKA
301: ASLRGNVLRY VCVIGKTGCQ VGLQEVPKDS ALGRLRGSDN VVEIYSRCYE SSPLVIQGAG AGNDTTAAGV LADIIDLQDL FQARP

Best Arabidopsis Sequence Match ( AT5G21060.1 )
(BLAST)

001: MKKIPVLLMG CGGVGRHLLQ HIVSCRSLHA KMGVHIRVIG VCDSKSLVAP MDVLKEELND ELLSEVCLIK STGSALSKLG ALGGYRVVHD SELSTETEEI
101: AKLLGKSTGL AVVDCSASME TIEILMKAVD LGCCIVLANK KPVTSTLEHY DKLALHPRFI RHESTVGAGL PVIASLNRII SSGDPVHRIV GSLSGTLGYV
201: MSELEDGKPL SQVVQAAKKL GYTEPDPRDD LGGMDVARKG LILARLLGKR IIMDSIKIES LYPEEMGPGL MSVDDFLHNG IVKLDQNIEE RVKKASSKGC
301: VLRYVCVIEG SSVQVGIREV SKDSPLGRLR GSDNIVEIYS RCYKEQPLVI QGAGAGNDTT AAGVLADIID LQDLFH

Arabidopsis Description

Homoserine dehydrogenase [Source:UniProtKB/TrEMBL;Acc:F4K6Y8]
SUBAcon: [mitochondrion,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.