Factsheet for Bra002352.1-P

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
mitochondrion 4
plastid 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	mitochondrion, nucleus, plastid, secretory
BaCelLo:	nucleus
iPSORT:	secretory
MultiLoc:	mitochondrion
Plant-mPloc:	plastid
Predotar:	mitochondrion
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY16591	Canola	mitochondrion	96.56	96.56
CDX92414	Canola	mitochondrion	98.15	95.37
AT5G21060.2	Thale cress	mitochondrion, plastid	85.71	85.71
VIT_06s0009g01460.t01	Wine grape	mitochondrion, plastid	67.72	73.14
Solyc11g072010.1.1	Tomato	mitochondrion	72.49	73.07
KRG89878	Soybean	extracellular, plastid	71.43	71.81
TraesCS5B01G141000.2	Wheat	plastid	66.4	66.23
PGSC0003DMT400070475	Potato	mitochondrion	72.75	65.63
TraesCS5D01G149900.1	Wheat	mitochondrion, vacuole	66.67	65.45
TraesCS5A01G142200.1	Wheat	plastid	66.14	64.94
Os11t0128800-01	Rice	plasma membrane	65.34	64.32
Os12t0125400-01	Rice	plasma membrane	65.08	64.06
Zm00001d023278_P002	Maize	extracellular, vacuole	65.08	63.24
HORVU5Hr1G045450.2	Barley	peroxisome, plastid	66.14	58.41
EES15586	Sorghum	extracellular	47.88	57.83
GSMUA_Achr8P09360_001	Banana	plastid	61.9	26.09
Bra023169.1-P	Field mustard	plastid	30.42	12.65
Bra013425.1-P	Field mustard	plastid	30.16	12.35
Bra008840.1-P	Field mustard	plastid	3.97	2.72
Bra023401.1-P	Field mustard	plastid	3.7	2.53
Bra035544.1-P	Field mustard	plastid	2.65	1.73
Bra006235.1-P	Field mustard	plastid	2.12	1.49

Protein Annotations

KEGG:00260+1.1.1.3	KEGG:00270+1.1.1.3	KEGG:00300+1.1.1.3	Gene3D:3.30.360.10	Gene3D:3.40.50.720	MapMan:35.1
InterPro:Asp/hSer_DH_NAD-bd	EnsemblPlantsGene:Bra002352	EnsemblPlants:Bra002352.1	EnsemblPlants:Bra002352.1-P	GO:GO:0000166	GO:GO:0003674
GO:GO:0003824	GO:GO:0004412	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005829	GO:GO:0006520	GO:GO:0008150	GO:GO:0008152	GO:GO:0008652
GO:GO:0009058	GO:GO:0009082	GO:GO:0009086	GO:GO:0009088	GO:GO:0009097	GO:GO:0009987
GO:GO:0016491	GO:GO:0050661	GO:GO:0055114	InterPro:HDH_CS	InterPro:HDH_cat	InterPro:HDH_short
UniProt:M4CDS1	InterPro:NAD(P)-bd_dom_sf	PFAM:PF00742	PFAM:PF03447	PIRSF:PIRSF036497	ScanProsite:PS01042
PANTHER:PTHR43070	PANTHER:PTHR43070:SF4	SUPFAM:SSF51735	SUPFAM:SSF55347	UniParc:UPI0002544876	SEG:seg

Description

AT5G21060 (E=4e-162) | homoserine dehydrogenase family protein

Coordinates

chrA10:+:10131243..10134333

Molecular Weight (calculated)

40722.6 Da

IEP (calculated)

6.008

GRAVY (calculated)

0.016

Length

378 amino acids

Sequence
(BLAST)

001: MKKISVILMG CGGVGRQLLQ HIVSFRSLHA KMGVHLRVVG VSDSKSLVVP VDVLKEELDD ELLSVVCRIK SAGSPLTTLD ALGKGEYRVF NGSESRRETE
101: EIAQLLGKST GLVVVDCSAS SETVEILTKA VDLGCCAVLA NKKPLTSTLE HYDKLVLDPR RIRHESTVGA GLPVIASMNR IISSGDPVHS IVGSLSGTLG
201: YVMSELEDGR PLSQVVRAAK TLGYTEPDPR DDLSGMDVAR KALILARLLG KRIIMDSIKI ESLYPEEMGP GVMTVDDFLQ NGIAKLDQNI EERVQRASSN
301: GCVLRYVCMI EGSSVQVGIR EVPKDSPLGR LRGSDNIVEI RSRCYKEQPL VIQGAGAGND TTAAGVLADI IDMQDLFP

Best Arabidopsis Sequence Match ( AT5G21060.2 )
(BLAST)

001: MKKIPVLLMG CGGVGRHLLQ HIVSCRSLHA KMGVHIRVIG VCDSKSLVAP MDVLKEELND ELLSEVCLIK STGSALSKLG ALEKGGYRVV HDSELSTETE
101: EIAKLLGKST GLAVVDCSAS METIEILMKA VDLGCCIVLA NKKPVTSTLE HYDKLALHPR FIRHESTVGA GLPVIASLNR IISSGDPVHR IVGSLSGTLG
201: YVMSELEDGK PLSQVVQAAK KLGYTEPDPR DDLGGMDVAR KGLILARLLG KRIIMDSIKI ESLYPEEMGP GLMSVDDFLH NGIVKLDQNI EERVKKASSK
301: GCVLRYVCVI EGSSVQVGIR EVSKDSPLGR LRGSDNIVEI YSRCYKEQPL VIQGAGAGND TTAAGVLADI IDLQDLFH

Arabidopsis Description

Homoserine dehydrogenase [Source:UniProtKB/TrEMBL;Acc:F4K6Y8]
SUBAcon: [mitochondrion,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.