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Thale cress
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Thale cress
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid, mitochondrion

Predictor Summary:
  • plastid 3
  • extracellular 1
  • golgi 1
  • plasma membrane 1
  • endoplasmic reticulum 1
  • vacuole 1
  • cytosol 1
  • mitochondrion 3
Predictors GFP MS/MS Papers
Winner Takes All:mitochondrion, plastid
Any Predictor:cytosol, mitochondrion, plastid, secretory
BaCelLo:plastid
iPSORT:secretory
MultiLoc:cytosol
Predotar:mitochondrion
PProwler:mitochondrion
TargetP:mitochondrion
WoLF PSORT:plastid
YLoc:plastid
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Bra002352.1-P Field mustard mitochondrion 85.71 85.71
CDY16591 Canola mitochondrion 85.71 85.71
CDX92414 Canola mitochondrion 86.77 84.32
VIT_06s0009g01460.t01 Wine grape mitochondrion, plastid 66.67 72.0
Solyc11g072010.1.1 Tomato mitochondrion 71.16 71.73
KRG89878 Soybean extracellular, plastid 68.78 69.15
TraesCS5B01G141000.2 Wheat plastid 65.87 65.7
TraesCS5D01G149900.1 Wheat mitochondrion, vacuole 65.87 64.68
PGSC0003DMT400070475 Potato mitochondrion 71.43 64.44
TraesCS5A01G142200.1 Wheat plastid 65.34 64.16
Os11t0128800-01 Rice plasma membrane 64.81 63.8
Os12t0125400-01 Rice plasma membrane 64.55 63.54
Zm00001d023278_P002 Maize extracellular, vacuole 64.29 62.47
HORVU5Hr1G045450.2 Barley peroxisome, plastid 65.87 58.18
EES15586 Sorghum extracellular 48.15 58.15
GSMUA_Achr8P09360_001 Banana plastid 62.96 26.53
AT4G19710.2 Thale cress plastid 32.54 13.43
AT1G31230.1 Thale cress plastid 30.42 12.62
AT5G13280.1 Thale cress plastid 3.97 2.64
AT3G02020.1 Thale cress plastid 2.65 1.79
AT5G14060.1 Thale cress plastid 2.38 1.65
Protein Annotations
KEGG:00260+1.1.1.3KEGG:00270+1.1.1.3KEGG:00300+1.1.1.3Gene3D:3.30.360.10Gene3D:3.40.50.720MapMan:35.1
EntrezGene:832230UniProt:A0A178U956ProteinID:AED92925.1ProteinID:AED92926.1ArrayExpress:AT5G21060EnsemblPlantsGene:AT5G21060
RefSeq:AT5G21060TAIR:AT5G21060RefSeq:AT5G21060-TAIR-GEnsemblPlants:AT5G21060.2TAIR:AT5G21060.2Unigene:At.66690
EMBL:BT004002EMBL:BT005655UniProt:F4K6Y8GO:GO:0003674GO:GO:0003824GO:GO:0004072
GO:GO:0004412GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0005737GO:GO:0005829
GO:GO:0006520GO:GO:0008150GO:GO:0008152GO:GO:0008652GO:GO:0009058GO:GO:0009067
GO:GO:0009082GO:GO:0009086GO:GO:0009088GO:GO:0009090GO:GO:0009097GO:GO:0009536
GO:GO:0009570GO:GO:0009987GO:GO:0016301GO:GO:0016310GO:GO:0016491GO:GO:0016740
GO:GO:0055114InterPro:HDH_CSInterPro:HDH_catInterPro:HDH_shortInterPro:NAD(P)-bd_dom_sfRefSeq:NP_001031916.1
RefSeq:NP_197605.1ProteinID:OAO90382.1ProteinID:OAO90383.1PFAM:PF00742PIRSF:PIRSF036497PO:PO:0000013
PO:PO:0000037PO:PO:0000230PO:PO:0000293PO:PO:0001054PO:PO:0001078PO:PO:0001081
PO:PO:0001185PO:PO:0004507PO:PO:0007064PO:PO:0007095PO:PO:0007098PO:PO:0007103
PO:PO:0007115PO:PO:0007123PO:PO:0007611PO:PO:0007616PO:PO:0008019PO:PO:0009005
PO:PO:0009006PO:PO:0009009PO:PO:0009010PO:PO:0009025PO:PO:0009029PO:PO:0009030
PO:PO:0009031PO:PO:0009032PO:PO:0009046PO:PO:0009047PO:PO:0009052PO:PO:0020030
PO:PO:0020038PO:PO:0020100PO:PO:0020137PO:PO:0025022PO:PO:0025281ScanProsite:PS01042
PANTHER:PTHR43070PANTHER:PTHR43070:SF4SUPFAM:SSF51735SUPFAM:SSF55347UniParc:UPI00005DC111SEG:seg
Description
Homoserine dehydrogenase [Source:UniProtKB/TrEMBL;Acc:F4K6Y8]
Coordinates
chr5:-:7148978..7152876
Molecular Weight (calculated)
40672.9 Da
IEP (calculated)
6.728
GRAVY (calculated)
0.081
Length
378 amino acids
Sequence
(BLAST)
001: MKKIPVLLMG CGGVGRHLLQ HIVSCRSLHA KMGVHIRVIG VCDSKSLVAP MDVLKEELND ELLSEVCLIK STGSALSKLG ALEKGGYRVV HDSELSTETE
101: EIAKLLGKST GLAVVDCSAS METIEILMKA VDLGCCIVLA NKKPVTSTLE HYDKLALHPR FIRHESTVGA GLPVIASLNR IISSGDPVHR IVGSLSGTLG
201: YVMSELEDGK PLSQVVQAAK KLGYTEPDPR DDLGGMDVAR KGLILARLLG KRIIMDSIKI ESLYPEEMGP GLMSVDDFLH NGIVKLDQNI EERVKKASSK
301: GCVLRYVCVI EGSSVQVGIR EVSKDSPLGR LRGSDNIVEI YSRCYKEQPL VIQGAGAGND TTAAGVLADI IDLQDLFH
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.