Factsheet for Solyc11g072010.1.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 1
extracellular 1
golgi 2
plasma membrane 1
endoplasmic reticulum 1
vacuole 1
mitochondrion 4
plastid 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	mitochondrion, nucleus, plastid, secretory
BaCelLo:	nucleus
iPSORT:	secretory
MultiLoc:	mitochondrion
Plant-mPloc:	plastid
Predotar:	mitochondrion
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	golgi

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400070475	Potato	mitochondrion	96.53	86.4
VIT_06s0009g01460.t01	Wine grape	mitochondrion, plastid	69.87	74.86
KRG89878	Soybean	extracellular, plastid	74.67	74.47
Bra002352.1-P	Field mustard	mitochondrion	73.07	72.49
CDY16591	Canola	mitochondrion	73.07	72.49
AT5G21060.2	Thale cress	mitochondrion, plastid	71.73	71.16
CDX92414	Canola	mitochondrion	73.07	70.44
TraesCS5B01G141000.2	Wheat	plastid	67.73	67.02
TraesCS5A01G142200.1	Wheat	plastid	68.0	66.23
TraesCS5D01G149900.1	Wheat	mitochondrion, vacuole	67.73	65.97
Os12t0125400-01	Rice	plasma membrane	67.2	65.62
Os11t0128800-01	Rice	plasma membrane	66.67	65.1
Zm00001d023278_P002	Maize	extracellular, vacuole	66.67	64.27
EES15586	Sorghum	extracellular	49.87	59.74
HORVU5Hr1G045450.2	Barley	peroxisome, plastid	67.73	59.35
Solyc11g040380.1.1	Tomato	plastid	8.53	27.83
GSMUA_Achr8P09360_001	Banana	plastid	63.73	26.64
Solyc06g064550.2.1	Tomato	plastid	33.07	13.49
Solyc11g040390.1.1	Tomato	plastid	24.0	10.99
Solyc01g005240.2.1	Tomato	plastid	4.27	2.83

Protein Annotations

KEGG:00260+1.1.1.3	KEGG:00270+1.1.1.3	KEGG:00300+1.1.1.3	Gene3D:3.30.360.10	Gene3D:3.40.50.720	MapMan:35.1
GO:GO:0003674	GO:GO:0003824	GO:GO:0004072	GO:GO:0004412	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005829	GO:GO:0006520	GO:GO:0008150	GO:GO:0008152
GO:GO:0008652	GO:GO:0009058	GO:GO:0009067	GO:GO:0009082	GO:GO:0009086	GO:GO:0009088
GO:GO:0009090	GO:GO:0009097	GO:GO:0009536	GO:GO:0009570	GO:GO:0009987	GO:GO:0016301
GO:GO:0016310	GO:GO:0016491	GO:GO:0016740	GO:GO:0055114	InterPro:HDH_CS	InterPro:HDH_cat
InterPro:HDH_short	UniProt:K4DAQ8	InterPro:NAD(P)-bd_dom_sf	PFAM:PF00742	PIRSF:PIRSF036497	ScanProsite:PS01042
PANTHER:PTHR43070	PANTHER:PTHR43070:SF4	SUPFAM:SSF51735	SUPFAM:SSF55347	EnsemblPlantsGene:Solyc11g072010.1	EnsemblPlants:Solyc11g072010.1.1
UniParc:UPI0002769997	SEG:seg	:	:	:	:

Description

Homoserine dehydrogenase [Source:UniProtKB/TrEMBL;Acc:K4DAQ8]

Coordinates

chr11:-:55302597..55309240

Molecular Weight (calculated)

40365.1 Da

IEP (calculated)

5.003

GRAVY (calculated)

0.106

Length

375 amino acids

Sequence
(BLAST)

001: MKNLPVFLMG CGGVGRQLLQ HIVSCRSLHA KQGVHLRVVG VCDSKYLVVV ADVLTAELDD SFLLEVCRVK SNGSSLQTLV NSGVCQVFSG PEVIQKVVDI
101: GRLGKSTGLA FVDCSASAET IGVLNQVVDF GCCVVLANKK PLTVPMEDYD KLVSQPRRLR HESTVGAGLP VIASLNRIIS SGDPVYRIIG SLSGTLGYVM
201: SEVEDGKPLS QVVNAAKSLG YTEPDPRDDL GGMDVARKAL IIARLLGRRL NLDNMKIESL YPEEMGPDVM PLEDFLVNGL PLLDQKIEDR IKQASANGNV
301: LRYVCLIDEA RCEVGIQEVP KDSALGRLRG SDNVVEIYSR CYEKQPLVIQ GAGAGNDTTA AGVLADILDI QDLFP

Best Arabidopsis Sequence Match ( AT5G21060.1 )
(BLAST)

001: MKKIPVLLMG CGGVGRHLLQ HIVSCRSLHA KMGVHIRVIG VCDSKSLVAP MDVLKEELND ELLSEVCLIK STGSALSKLG ALGGYRVVHD SELSTETEEI
101: AKLLGKSTGL AVVDCSASME TIEILMKAVD LGCCIVLANK KPVTSTLEHY DKLALHPRFI RHESTVGAGL PVIASLNRII SSGDPVHRIV GSLSGTLGYV
201: MSELEDGKPL SQVVQAAKKL GYTEPDPRDD LGGMDVARKG LILARLLGKR IIMDSIKIES LYPEEMGPGL MSVDDFLHNG IVKLDQNIEE RVKKASSKGC
301: VLRYVCVIEG SSVQVGIREV SKDSPLGRLR GSDNIVEIYS RCYKEQPLVI QGAGAGNDTT AAGVLADIID LQDLFH

Arabidopsis Description

Homoserine dehydrogenase [Source:UniProtKB/TrEMBL;Acc:F4K6Y8]
SUBAcon: [plastid,mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.