Factsheet for PGSC0003DMT400070475

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 2
mitochondrion 4
plastid 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	mitochondrion, nucleus, plastid, secretory
BaCelLo:	nucleus
iPSORT:	secretory
MultiLoc:	mitochondrion
Plant-mPloc:	plastid
Predotar:	mitochondrion
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	golgi

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc11g072010.1.1	Tomato	mitochondrion	86.4	96.53
VIT_06s0009g01460.t01	Wine grape	mitochondrion, plastid	62.53	74.86
KRG89878	Soybean	extracellular, plastid	66.59	74.2
Bra002352.1-P	Field mustard	mitochondrion	65.63	72.75
CDY16591	Canola	mitochondrion	65.63	72.75
AT5G21060.2	Thale cress	mitochondrion, plastid	64.44	71.43
CDX92414	Canola	mitochondrion	65.63	70.69
TraesCS5B01G141000.2	Wheat	plastid	60.86	67.28
TraesCS5D01G149900.1	Wheat	mitochondrion, vacuole	61.34	66.75
TraesCS5A01G142200.1	Wheat	plastid	61.34	66.75
Os12t0125400-01	Rice	plasma membrane	60.38	65.89
Os11t0128800-01	Rice	plasma membrane	59.9	65.36
Zm00001d023278_P002	Maize	extracellular, vacuole	60.14	64.78
EES15586	Sorghum	extracellular	44.87	60.06
HORVU5Hr1G045450.2	Barley	peroxisome, plastid	61.1	59.81
GSMUA_Achr8P09360_001	Banana	plastid	56.8	26.53
PGSC0003DMT400083218	Potato	plastid	30.07	13.67
PGSC0003DMT400058635	Potato	cytosol	3.82	2.75

Protein Annotations

KEGG:00260+1.1.1.3	KEGG:00270+1.1.1.3	KEGG:00300+1.1.1.3	Gene3D:3.30.360.10	Gene3D:3.40.50.720	MapMan:35.1
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005829	GO:GO:0006520
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0055114	InterPro:HDH_cat	UniProt:M1CM93
InterPro:NAD(P)-bd_dom_sf	PFAM:PF00742	EnsemblPlantsGene:PGSC0003DMG400027401	PGSC:PGSC0003DMG400027401	EnsemblPlants:PGSC0003DMT400070475	PANTHER:PTHR43070
PANTHER:PTHR43070:SF4	SUPFAM:SSF51735	SUPFAM:SSF55347	UniParc:UPI00029686C2	SEG:seg	:

Description

Homoserine dehydrogenase [Source:PGSC_GENE;Acc:PGSC0003DMG400027401]

Coordinates

chr11:-:43603743..43613415

Molecular Weight (calculated)

45223.2 Da

IEP (calculated)

7.034

GRAVY (calculated)

0.102

Length

419 amino acids

Sequence
(BLAST)

001: MKNLPVFLMG CGGVGRQLLQ HIVSCRSLHA KQGVHLRVVG VCDSKSLVVV ADVLIAELDD SFLLEVCRVK SNGSSLQTLA NSGVCQVFSG PEVIGKVIDI
101: GLLGKSTGLA FVDCSASAET IGVLNQVVDF GCCVVLANKK PLTVPMEDYD KLVSRPRRLR HESTVGAGLP VIASLNRIIS SGDPVYRIIG SLSGTLGYVM
201: SEVEYGRPFS QVVNAAKSLG YTEPGSLSST NSARGIEKKL LRMTVAPERV THMRIVPKLT ALLRHDRLDP RDDLGGMDVA RKALILARLL GRRLNLDNMK
301: IESLYPEEMG PDVMPLEDFL VNGLPLLDQK IEDRIKQASA NGNVLRYVCL IDDARCEVGI QEVSKDSALG RLRGSDNVVE IYSRCYEKQP LVIQGAGAGN
401: DTTAAGVLAD ILDIQDLFP

Best Arabidopsis Sequence Match ( AT5G21060.1 )
(BLAST)

001: MKKIPVLLMG CGGVGRHLLQ HIVSCRSLHA KMGVHIRVIG VCDSKSLVAP MDVLKEELND ELLSEVCLIK STGSALSKLG ALGGYRVVHD SELSTETEEI
101: AKLLGKSTGL AVVDCSASME TIEILMKAVD LGCCIVLANK KPVTSTLEHY DKLALHPRFI RHESTVGAGL PVIASLNRII SSGDPVHRIV GSLSGTLGYV
201: MSELEDGKPL SQVVQAAKKL GYTEPDPRDD LGGMDVARKG LILARLLGKR IIMDSIKIES LYPEEMGPGL MSVDDFLHNG IVKLDQNIEE RVKKASSKGC
301: VLRYVCVIEG SSVQVGIREV SKDSPLGRLR GSDNIVEIYS RCYKEQPLVI QGAGAGNDTT AAGVLADIID LQDLFH

Arabidopsis Description

Homoserine dehydrogenase [Source:UniProtKB/TrEMBL;Acc:F4K6Y8]
SUBAcon: [mitochondrion,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.