Factsheet for Zm00001d023278_P002

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, vacuole

Predictor Summary:

extracellular 3
golgi 2
plasma membrane 2
endoplasmic reticulum 2
vacuole 3
mitochondrion 2
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular, vacuole
Any Predictor:	mitochondrion, secretory
iPSORT:	secretory
MultiLoc:	extracellular
Predotar:	secretory
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	vacuole

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os11t0128800-01	Rice	plasma membrane	86.89	88.02
Os12t0125400-01	Rice	plasma membrane	86.12	87.24
EES15586	Sorghum	extracellular	70.18	87.22
TraesCS5B01G141000.2	Wheat	plastid	84.83	87.07
TraesCS5A01G142200.1	Wheat	plastid	84.32	85.19
TraesCS5D01G149900.1	Wheat	mitochondrion, vacuole	83.8	84.68
HORVU5Hr1G045450.2	Barley	peroxisome, plastid	84.58	76.87
Solyc11g072010.1.1	Tomato	mitochondrion	64.27	66.67
VIT_06s0009g01460.t01	Wine grape	mitochondrion, plastid	59.13	65.71
KRG89878	Soybean	extracellular, plastid	63.5	65.69
Bra002352.1-P	Field mustard	mitochondrion	63.24	65.08
CDY16591	Canola	mitochondrion	62.98	64.81
AT5G21060.2	Thale cress	mitochondrion, plastid	62.47	64.29
CDX92414	Canola	mitochondrion	62.98	62.98
PGSC0003DMT400070475	Potato	mitochondrion	64.78	60.14
Zm00001d050133_P001	Maize	plastid	30.33	31.22
GSMUA_Achr8P09360_001	Banana	plastid	65.55	28.43
Zm00001d019988_P001	Maize	plastid	33.93	14.39
Zm00001d005535_P002	Maize	plastid	29.56	10.72
Zm00001d029179_P001	Maize	extracellular	1.03	6.35
Zm00001d005151_P004	Maize	plastid	3.86	2.65
Zm00001d050134_P001	Maize	plastid	3.34	2.1
Zm00001d042264_P006	Maize	mitochondrion, plastid	2.83	1.9
Zm00001d037282_P001	Maize	plastid	0.77	1.85
Zm00001d035282_P001	Maize	mitochondrion	1.29	1.64
Zm00001d018301_P001	Maize	extracellular, plasma membrane	1.03	1.63
Zm00001d034851_P001	Maize	plastid	1.54	1.41

Protein Annotations

KEGG:00260+1.1.1.3	KEGG:00270+1.1.1.3	KEGG:00300+1.1.1.3	EntrezGene:100282632	Gene3D:3.30.360.10	Gene3D:3.40.50.720
MapMan:35.1	UniProt:A0A1D6IRD6	ProteinID:AQK38828.1	InterPro:Asp/hSer_DH_NAD-bd	GO:GO:0000166	GO:GO:0003674
GO:GO:0003824	GO:GO:0004412	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005829	GO:GO:0006520	GO:GO:0008150	GO:GO:0008152	GO:GO:0008652
GO:GO:0009058	GO:GO:0009082	GO:GO:0009086	GO:GO:0009088	GO:GO:0009097	GO:GO:0009987
GO:GO:0016491	GO:GO:0050661	GO:GO:0055114	InterPro:HDH_CS	InterPro:HDH_cat	InterPro:HDH_short
InterPro:NAD(P)-bd_dom_sf	PFAM:PF00742	PFAM:PF03447	PIRSF:PIRSF036497	ScanProsite:PS01042	PANTHER:PTHR43070
PANTHER:PTHR43070:SF4	SUPFAM:SSF51735	SUPFAM:SSF55347	UniParc:UPI00084475A1	EnsemblPlantsGene:Zm00001d023278	EnsemblPlants:Zm00001d023278_P002
EnsemblPlants:Zm00001d023278_T002	SEG:seg	:	:	:	:

Description

Homoserine dehydrogenase

Coordinates

chr10:+:2027907..2031976

Molecular Weight (calculated)

41127.8 Da

IEP (calculated)

6.057

GRAVY (calculated)

0.154

Length

389 amino acids

Sequence
(BLAST)

001: MPTPVKSVLP VVLLGCGGVG RYLLRHIVSC RPLHANQGVA IRVVGVADSS SLLVAEDVHS TGLDDALLTQ LCAAKSAGSP LSSLLGRGHC QLFKNPEARG
101: KVIDAATTLG RTTGLVLVDC SATYDTVSLL KDAVDHGCCV VLANKKPLTG AYEDFQKLVS NFRRIRFEST VCLCLVGAGL PVIASVTRII ASGDPITRIV
201: GSLSGTLGYV MSELEDGKKF SEVVKTAKSL GYTEPDPRDD LGGMDVARKA LILARLLGQQ ISMESINVES LYPSELGPDA VSTKDFLESG LVQLDKSMEE
301: RIRAASSRGN VLRYVCEIES AGCQVGLKEL PKDSALGRLR GSDNVVEIYS RCYQSSPLVI QGAGAGNDTT AAGVLADIID LQDLFQTMA

Best Arabidopsis Sequence Match ( AT5G21060.2 )
(BLAST)

001: MKKIPVLLMG CGGVGRHLLQ HIVSCRSLHA KMGVHIRVIG VCDSKSLVAP MDVLKEELND ELLSEVCLIK STGSALSKLG ALEKGGYRVV HDSELSTETE
101: EIAKLLGKST GLAVVDCSAS METIEILMKA VDLGCCIVLA NKKPVTSTLE HYDKLALHPR FIRHESTVGA GLPVIASLNR IISSGDPVHR IVGSLSGTLG
201: YVMSELEDGK PLSQVVQAAK KLGYTEPDPR DDLGGMDVAR KGLILARLLG KRIIMDSIKI ESLYPEEMGP GLMSVDDFLH NGIVKLDQNI EERVKKASSK
301: GCVLRYVCVI EGSSVQVGIR EVSKDSPLGR LRGSDNIVEI YSRCYKEQPL VIQGAGAGND TTAAGVLADI IDLQDLFH

Arabidopsis Description

Homoserine dehydrogenase [Source:UniProtKB/TrEMBL;Acc:F4K6Y8]
SUBAcon: [plastid,mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.