CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
mitochondrion 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	mitochondrion, plastid
BaCelLo:	plastid
iPSORT:	secretory
MultiLoc:	mitochondrion
Predotar:	mitochondrion
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra002352.1-P	Field mustard	mitochondrion	95.37	98.15
CDY16591	Canola	mitochondrion	94.6	97.35
AT5G21060.2	Thale cress	mitochondrion, plastid	84.32	86.77
VIT_06s0009g01460.t01	Wine grape	mitochondrion, plastid	66.07	73.43
Solyc11g072010.1.1	Tomato	mitochondrion	70.44	73.07
KRG89878	Soybean	extracellular, plastid	69.41	71.81
TraesCS5B01G141000.2	Wheat	plastid	64.52	66.23
PGSC0003DMT400070475	Potato	mitochondrion	70.69	65.63
TraesCS5D01G149900.1	Wheat	mitochondrion, vacuole	64.78	65.45
TraesCS5A01G142200.1	Wheat	plastid	64.27	64.94
Os11t0128800-01	Rice	plasma membrane	63.5	64.32
Os12t0125400-01	Rice	plasma membrane	63.24	64.06
Zm00001d023278_P002	Maize	extracellular, vacuole	62.98	62.98
HORVU5Hr1G045450.2	Barley	peroxisome, plastid	64.27	58.41
EES15586	Sorghum	extracellular	46.53	57.83
CDY51912	Canola	cytosol	18.51	34.12
GSMUA_Achr8P09360_001	Banana	plastid	60.15	26.09
CDY51625	Canola	plastid	30.08	12.84
CDY02370	Canola	plastid	29.82	12.76
CDY59140	Canola	plastid	29.82	12.62
CDY51915	Canola	plastid	29.56	12.47
CDX69652	Canola	plastid	4.11	2.9
CDY09781	Canola	plastid	3.86	2.73
CDX85659	Canola	plastid	3.86	2.71
CDX91135	Canola	plastid	3.86	2.7
CDY06621	Canola	plastid	2.83	1.91
CDY20797	Canola	plastid	2.83	1.9
CDX78557	Canola	plastid	2.31	1.68
CDX70538	Canola	plastid	2.31	1.65
CDX70539	Canola	mitochondrion	0.26	1.08

Protein Annotations

KEGG:00260+1.1.1.3	KEGG:00270+1.1.1.3	KEGG:00300+1.1.1.3	Gene3D:3.30.360.10	Gene3D:3.40.50.720	MapMan:35.1
GO:A0A078DVD5	InterPro:Asp/hSer_DH_NAD-bd	EnsemblPlants:CDX92414	ProteinID:CDX92414	ProteinID:CDX92414.1	GO:GO:0000166
GO:GO:0003674	GO:GO:0003824	GO:GO:0004412	GO:GO:0005488	GO:GO:0006520	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0016491	GO:GO:0050661	GO:GO:0055114	EnsemblPlantsGene:GSBRNA2T00154176001
InterPro:HDH_CS	InterPro:HDH_cat	InterPro:HDH_short	InterPro:NAD(P)-bd_dom_sf	PFAM:PF00742	PFAM:PF03447
PIRSF:PIRSF036497	ScanProsite:PS01042	PANTHER:PTHR43070	PANTHER:PTHR43070:SF4	SUPFAM:SSF51735	SUPFAM:SSF55347
UniPathway:UPA00050	UniPathway:UPA00051	UniParc:UPI0004EDCEFF	SEG:seg	:	:

Description

BnaA10g14530D

Coordinates

chrLK031872:+:532654..535995

Molecular Weight (calculated)

41961.2 Da

IEP (calculated)

5.950

GRAVY (calculated)

0.076

Length

389 amino acids

Sequence
(BLAST)

001: MKKISVILMG CGGVGRQLLQ HIVSFRSLHA KMGVHLRVVG VSDSKSLVVP VDVLKEELDD ELLSEVCSVK SAGSALTTLG ALGKGEYRVF NGSESRRETE
101: EIAQLLGKST GLVVVDCSAS SETVEILMKA VDLGCCAVLA NKKPLTSTLE HYDKLVLDPR RIRHESTVGA GLPVIASMNR IISSGDPVHS IVGSLSGTLG
201: YVMSELEDGR PLSQVVRAAK TLGYTEPDPR DDLSGMDVAR KALILARLLG KRIIMDSIKI ESLYPEEMGP GVMTVDDFLQ NGIAKLDQNI EERVQRASSN
301: GCVLRYVCMI EGSSVQVGIR EVPKDSPLGR LRGSDNILTL LQYFLLSIVE IRSRCYKEQP LVIQGAGAGN DTTAAGVLAD IIDMQDLFH

Best Arabidopsis Sequence Match ( AT5G21060.2 )
(BLAST)

001: MKKIPVLLMG CGGVGRHLLQ HIVSCRSLHA KMGVHIRVIG VCDSKSLVAP MDVLKEELND ELLSEVCLIK STGSALSKLG ALEKGGYRVV HDSELSTETE
101: EIAKLLGKST GLAVVDCSAS METIEILMKA VDLGCCIVLA NKKPVTSTLE HYDKLALHPR FIRHESTVGA GLPVIASLNR IISSGDPVHR IVGSLSGTLG
201: YVMSELEDGK PLSQVVQAAK KLGYTEPDPR DDLGGMDVAR KGLILARLLG KRIIMDSIKI ESLYPEEMGP GLMSVDDFLH NGIVKLDQNI EERVKKASSK
301: GCVLRYVCVI EGSSVQVGIR EVSKDSPLGR LRGSDNIVEI YSRCYKEQPL VIQGAGAGND TTAAGVLADI IDLQDLFH

Arabidopsis Description

Homoserine dehydrogenase [Source:UniProtKB/TrEMBL;Acc:F4K6Y8]
SUBAcon: [mitochondrion,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.