CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
mitochondrion 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, secretory
BaCelLo:	cytosol
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d050133_P001	Maize	plastid	73.46	41.01
CDY59140	Canola	plastid	93.36	21.44
CDY51915	Canola	plastid	92.42	21.15
CDY16591	Canola	mitochondrion	34.12	19.05
CDX92414	Canola	mitochondrion	34.12	18.51
CDY02370	Canola	plastid	77.25	17.93
CDY51625	Canola	plastid	77.25	17.89
CDX69652	Canola	plastid	3.79	1.45
CDY09781	Canola	plastid	3.32	1.27
CDX85659	Canola	plastid	3.32	1.26
CDX91135	Canola	plastid	3.32	1.26
CDY20797	Canola	plastid	2.37	0.87
CDY06621	Canola	plastid	1.42	0.52
CDX70538	Canola	plastid	0.0	0.0
CDX70539	Canola	mitochondrion	0.0	0.0
CDX78557	Canola	plastid	0.0	0.0

Protein Annotations

KEGG:00260+1.1.1.3	KEGG:00270+1.1.1.3	KEGG:00300+1.1.1.3	Gene3D:3.30.360.10	MapMan:4.1.2.2.4	GO:A0A078IPQ4
UniProt:A0A078IPQ4	EnsemblPlants:CDY51912	ProteinID:CDY51912	ProteinID:CDY51912.1	GO:GO:0003674	GO:GO:0003824
GO:GO:0004412	GO:GO:0006520	GO:GO:0008150	GO:GO:0008152	GO:GO:0008652	GO:GO:0009058
GO:GO:0009082	GO:GO:0009086	GO:GO:0009088	GO:GO:0009097	GO:GO:0009987	GO:GO:0016491
GO:GO:0055114	EnsemblPlantsGene:GSBRNA2T00004495001	InterPro:HDH_CS	InterPro:HDH_cat	PFAM:PF00742	ScanProsite:PS01042
PANTHER:PTHR43070	PANTHER:PTHR43070:SF2	SUPFAM:SSF55347	UniPathway:UPA00050	UniPathway:UPA00051	UniParc:UPI0004EEB5A2

Description

BnaC01g41010DHomoserine dehydrogenase [Source:UniProtKB/TrEMBL;Acc:A0A078IPQ4]

Coordinates

chrLK033039:-:9048..14117

Molecular Weight (calculated)

23118.8 Da

IEP (calculated)

5.154

GRAVY (calculated)

-0.201

Length

211 amino acids

Sequence
(BLAST)

001: MDLLISLKLI KGDKILRIEG ICSETLSYLF NNFVGDRSFS EVVAEAKKAG FTEPDPNDDL SGTDVARKIN RVIILARESG LKLDLSDLPI RSLVPEPLKG
101: GTSAEEFMEK LPQYDGDLAK ERLEAENSGE VLRYVGVVDT VNQKGTVELR RYKKDHPFAQ MAGSDNIIAF TTTRYKDHPL IVRGPGAGAQ VTAGGIFSDM
201: LRLASYLVAP S

Best Arabidopsis Sequence Match ( AT4G19710.2 )
(BLAST)

001: MATLKPSFTV SPPNSNPIRF GSFPPQCFLR VPKPRRLILP RFRKTTGGGG GLIRCELPDF HLSATATTVS GVSTVNLVDQ VQIPKGEMWS VHKFGGTCVG
101: NSQRIRNVAE VIINDNSERK LVVVSAMSKV TDMMYDLIRK AQSRDDSYLS ALEAVLEKHR LTARDLLDGD DLASFLSHLH NDISNLKAML RAIYIAGHAS
201: ESFSDFVAGH GELWSAQMLS YVVRKTGLEC KWMDTRDVLI VNPTSSNQVD PDFGESEKRL DKWFSLNPSK IIIATGFIAS TPQNIPTTLK RDGSDFSAAI
301: MGALLRARQV TIWTDVDGVY SADPRKVNEA VILQTLSYQE AWEMSYFGAN VLHPRTIIPV MRYNIPIVIR NIFNLSAPGT IICQPPEDDY DLKLTTPVKG
401: FATIDNLALI NVEGTGMAGV PGTASDIFGC VKDVGANVIM ISQASSEHSV CFAVPEKEVN AVSEALRSRF SEALQAGRLS QIEVIPNCSI LAAVGQKMAS
501: TPGVSCTLFS ALAKANINVR AISQGCSEYN VTVVIKREDS VKALRAVHSR FFLSRTTLAM GIVGPGLIGA TLLDQLRDQA AVLKQEFNID LRVLGITGSK
601: KMLLSDIGID LSRWRELLNE KGTEADLDKF TQQVHGNHFI PNSVVVDCTA DSAIASRYYD WLRKGIHVIT PNKKANSGPL DQYLKLRDLQ RKSYTHYFYE
701: ATVGAGLPII STLRGLLETG DKILRIEGIC SGTLSYLFNN FVGDRSFSEV VTEAKNAGFT EPDPRDDLSG TDVARKVIIL ARESGLKLDL ADLPIRSLVP
801: EPLKGCTSVE EFMEKLPQYD GDLAKERLDA ENSGEVLRYV GVVDAVNQKG TVELRRYKKE HPFAQLAGSD NIIAFTTTRY KDHPLIVRGP GAGAQVTAGG
901: IFSDILRLAS YLGAPS

Arabidopsis Description

AKHSDH2Bifunctional aspartokinase/homoserine dehydrogenase 2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:O81852]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.