CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

plastid 2
extracellular 4
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	mitochondrion, plastid, secretory
BaCelLo:	plastid
iPSORT:	secretory
MultiLoc:	extracellular
Predotar:	secretory
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d023278_P002	Maize	extracellular, vacuole	87.22	70.18
Os11t0128800-01	Rice	plasma membrane	80.51	65.62
Os12t0125400-01	Rice	plasma membrane	79.87	65.1
TraesCS5B01G141000.2	Wheat	plastid	77.32	63.85
TraesCS5A01G142200.1	Wheat	plastid	76.36	62.08
TraesCS5D01G149900.1	Wheat	mitochondrion, vacuole	76.04	61.82
HORVU5Hr1G045450.2	Barley	peroxisome, plastid	77.0	56.31
Solyc11g072010.1.1	Tomato	mitochondrion	59.74	49.87
KRG89878	Soybean	extracellular, plastid	58.47	48.67
VIT_06s0009g01460.t01	Wine grape	mitochondrion, plastid	54.31	48.57
AT5G21060.2	Thale cress	mitochondrion, plastid	58.15	48.15
Bra002352.1-P	Field mustard	mitochondrion	57.83	47.88
CDY16591	Canola	mitochondrion	57.51	47.62
CDX92414	Canola	mitochondrion	57.83	46.53
PGSC0003DMT400070475	Potato	mitochondrion	60.06	44.87
GSMUA_Achr8P09360_001	Banana	plastid	59.42	20.74
EER96488	Sorghum	plastid	30.03	10.25
EER93093	Sorghum	plastid	4.15	2.3
KXG34945	Sorghum	mitochondrion, plastid	3.83	2.14
OQU88150	Sorghum	mitochondrion	3.51	1.98

Protein Annotations

KEGG:00260+1.1.1.3	KEGG:00270+1.1.1.3	KEGG:00300+1.1.1.3	Gene3D:3.30.360.10	Gene3D:3.40.50.720	MapMan:35.1
EntrezGene:8071442	UniProt:C5YQR0	EnsemblPlants:EES15586	ProteinID:EES15586	ProteinID:EES15586.2	GO:GO:0000166
GO:GO:0003674	GO:GO:0003824	GO:GO:0004072	GO:GO:0004412	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005829	GO:GO:0006520	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009067	GO:GO:0009086	GO:GO:0009088	GO:GO:0009090
GO:GO:0009097	GO:GO:0009536	GO:GO:0009570	GO:GO:0009987	GO:GO:0016301	GO:GO:0016310
GO:GO:0016740	GO:GO:0050661	GO:GO:0055114	InterPro:HDH_cat	InterPro:NAD(P)-bd_dom_sf	PFAM:PF00742
PANTHER:PTHR43070	PANTHER:PTHR43070:SF4	EnsemblPlantsGene:SORBI_3008G019532	SUPFAM:SSF51735	SUPFAM:SSF55347	unigene:Sbi.16987
UniParc:UPI000B8B9ABA	RefSeq:XP_002441748.1	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr8:+:1670066..1673584

Molecular Weight (calculated)

33208.9 Da

IEP (calculated)

6.353

GRAVY (calculated)

0.125

Length

313 amino acids

Sequence
(BLAST)

001: MPTPVKSVLP VVLLGCGGVG RYLLRHIVSC RPLHANQGVA IRVVGVADSS SLLVAEDVHS NGLDDALLTQ LCAAKSAGSP LSSLLAQGHC QLFKNPEARG
101: KEDFQKLVSN FRRIRFESTV GAGLPVIASV TRIIASGDPV SRIVGSLSGT LGYVMNPRDD LGGMDVARKV SELGPDAVST KDFLESGLVQ LDKSMEERVK
201: AAASRGNVLR YVAEIESTGC QVGLKELPKD SALGRLRGSD NVVMHPSLLF FSPFVWSSLY VTTDCSFDQV EIYSRCYQSS PLVIQGAGAG NDTTAAGVLA
301: DIIDLQDLFQ TTA

Best Arabidopsis Sequence Match ( AT5G21060.1 )
(BLAST)

001: MKKIPVLLMG CGGVGRHLLQ HIVSCRSLHA KMGVHIRVIG VCDSKSLVAP MDVLKEELND ELLSEVCLIK STGSALSKLG ALGGYRVVHD SELSTETEEI
101: AKLLGKSTGL AVVDCSASME TIEILMKAVD LGCCIVLANK KPVTSTLEHY DKLALHPRFI RHESTVGAGL PVIASLNRII SSGDPVHRIV GSLSGTLGYV
201: MSELEDGKPL SQVVQAAKKL GYTEPDPRDD LGGMDVARKG LILARLLGKR IIMDSIKIES LYPEEMGPGL MSVDDFLHNG IVKLDQNIEE RVKKASSKGC
301: VLRYVCVIEG SSVQVGIREV SKDSPLGRLR GSDNIVEIYS RCYKEQPLVI QGAGAGNDTT AAGVLADIID LQDLFH

Arabidopsis Description

Homoserine dehydrogenase [Source:UniProtKB/TrEMBL;Acc:F4K6Y8]
SUBAcon: [mitochondrion,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.