CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

plastid 10
mitochondrion 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH58834	Soybean	endoplasmic reticulum, plastid	97.82	97.82
KRH48846	Soybean	cytosol	28.28	84.92
VIT_18s0001g03660.t01	Wine grape	mitochondrion, plastid	79.04	83.12
GSMUA_Achr5P01800_001	Banana	vacuole	64.85	80.93
KRG97357	Soybean	cytoskeleton, cytosol, peroxisome	56.77	80.75
CDY59140	Canola	plastid	76.53	76.28
Bra013425.1-P	Field mustard	plastid	76.75	76.16
AT4G19710.2	Thale cress	plastid	76.09	76.09
CDY51915	Canola	plastid	76.31	75.81
Solyc11g040390.1.1	Tomato	plastid	67.36	75.34
Solyc06g064550.2.1	Tomato	plastid	74.67	74.43
PGSC0003DMT400083218	Potato	plastid	74.56	74.08
GSMUA_Achr4P28160_001	Banana	plastid	75.22	74.01
Os08t0342400-02	Rice	plastid	73.25	72.86
Os09t0294000-01	Rice	plasma membrane	71.72	71.8
Zm00001d019988_P001	Maize	plastid	71.51	71.43
EER96488	Sorghum	plastid	71.51	71.43
TraesCS5A01G177400.1	Wheat	golgi	70.96	71.04
TraesCS5D01G181600.4	Wheat	plastid	70.74	70.82
TraesCS5B01G174600.1	Wheat	plastid	70.41	70.49
HORVU5Hr1G053950.1	Barley	plastid	70.52	69.09
Zm00001d050134_P001	Maize	plastid	44.87	66.29
Zm00001d005535_P002	Maize	plastid	63.32	54.05
GSMUA_Achr5P01810_001	Banana	plastid	12.34	44.66
KRG89878	Soybean	extracellular, plastid	13.54	32.98
KRH08407	Soybean	plastid	15.94	25.84
KRH70062	Soybean	plastid	15.61	25.44
KRG94687	Soybean	plastid	14.96	24.38
KRH06839	Soybean	plastid	14.63	23.89

Protein Annotations

KEGG:00260+1.1.1.3	KEGG:00260+2.7.2.4	KEGG:00261+2.7.2.4	KEGG:00270+1.1.1.3	KEGG:00270+2.7.2.4	KEGG:00300+1.1.1.3
KEGG:00300+2.7.2.4	Gene3D:3.30.2130.10	Gene3D:3.30.360.10	Gene3D:3.40.1160.10	Gene3D:3.40.50.720	MapMan:4.1.2.2.4
InterPro:ACT_dom	EMBL:ACUP02004823	InterPro:AceGlu_kinase-like_sf	InterPro:Asp/Glu/Uridylate_kinase	InterPro:Asp/hSer_DH_NAD-bd	InterPro:Asp_kinase
InterPro:Aspartate_kinase_CS	InterPro:CASTOR_ACT_dom	EnsemblPlantsGene:GLYMA_08G107800	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824
GO:GO:0004072	GO:GO:0004412	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0006520	GO:GO:0008150	GO:GO:0008152	GO:GO:0008652	GO:GO:0009058
GO:GO:0009067	GO:GO:0009089	GO:GO:0009090	GO:GO:0009507	GO:GO:0009536	GO:GO:0009570
GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0016301	GO:GO:0016310	GO:GO:0016491
GO:GO:0016740	GO:GO:0050661	GO:GO:0055114	InterPro:HDH_CS	InterPro:HDH_cat	UniProt:I1KS56
InterPro:IPR002912	InterPro:IPR036393	EnsemblPlants:KRH42738	ProteinID:KRH42738	ProteinID:KRH42738.1	InterPro:NAD(P)-bd_dom_sf
PFAM:PF00696	PFAM:PF00742	PFAM:PF01842	PFAM:PF03447	PFAM:PF13840	ScanProsite:PS00324
ScanProsite:PS01042	PFscan:PS51671	PANTHER:PTHR43070	PANTHER:PTHR43070:SF2	MetaCyc:PWY-2941	MetaCyc:PWY-2942
MetaCyc:PWY-5097	MetaCyc:PWY-6559	MetaCyc:PWY-6562	MetaCyc:PWY-7153	SUPFAM:SSF51735	SUPFAM:SSF53633
SUPFAM:SSF55021	SUPFAM:SSF55347	TIGRFAMs:TIGR00657	UniParc:UPI00023C6781	SEG:seg	:

Description

hypothetical protein

Coordinates

chr8:-:8295278..8306410

Molecular Weight (calculated)

100416.0 Da

IEP (calculated)

7.804

GRAVY (calculated)

-0.125

Length

916 amino acids

Sequence
(BLAST)

001: MASFSAAVAQ FSRVSPSHTS LHSHSHGTLF QSQCRPFFLS RTSHSLRKGL TLPRGREAPS TSVRASFTDV SPNVSLEEKQ LPKGETWSVH KFGGTCVGTS
101: QRIKNVADII LKDDSERKLV VVSAMSKVTD MMYDLIHKAQ SRDESYTAAL NAVLEKHSAT AHDILDGDNL ATFLSKLHHD ISNLKAMLRA IYIAGHATES
201: FTDFVVGHGE LWSAQMLSLV IRKNGTDCKW MDTRDVLIVN PTGSNQVDPD YLESEQRLEK WYSLNPCKVI IATGFIASTP QNIPTTLKRD GSDFSAAIMG
301: ALFKARQVTI WTDVDGVYSA DPRKVSEAVI LKTLSYQEAW EMSYFGANVL HPRTIIPVMR YGIPIMIRNI FNLSAPGTKI CHPSVNDHED SQNLQNFVKG
401: FATIDNLALV NVEGTGMAGV PGTASAIFGA VKDVGANVIM ISQASSEHSV CFAVPEKEVK AVAEALQSRF RQALDNGRLS QVAVIPNCSI LAAVGQKMAS
501: TPGVSASLFN ALAKANINVR AIAQGCSEYN ITVVVKREDC IKALRAVHSR FYLSRTTIAM GIIGPGLIGS TLLEQLRDQA STLKEEFNID LRVMGILGSK
601: SMLLSDVGID LARWRELREE RGEVANMEKF VQHVHGNHFI PNTALVDCTA DSVIAGYYYD WLRKGIHVVT PNKKANSGPL DQYLKLRALQ RQSYTHYFYE
701: ATVGAGLPIV STLRGLLETG DKILQIEGIF SGTLSYIFNN FKDGRAFSEV VSEAKEAGYT EPDPRDDLSG TDVARKVIIL ARESGLKLEL SNIPVESLVP
801: EPLRACASAQ EFMQELPKFD QEFTKKQEDA ENAGEVLRYV GVVDVTNKKG VVELRRYKKD HPFAQLSGSD NIIAFTTRRY KDQPLIVRGP GAGAQVTAGG
901: IFSDILRLAS YLGAPS

Best Arabidopsis Sequence Match ( AT4G19710.2 )
(BLAST)

001: MATLKPSFTV SPPNSNPIRF GSFPPQCFLR VPKPRRLILP RFRKTTGGGG GLIRCELPDF HLSATATTVS GVSTVNLVDQ VQIPKGEMWS VHKFGGTCVG
101: NSQRIRNVAE VIINDNSERK LVVVSAMSKV TDMMYDLIRK AQSRDDSYLS ALEAVLEKHR LTARDLLDGD DLASFLSHLH NDISNLKAML RAIYIAGHAS
201: ESFSDFVAGH GELWSAQMLS YVVRKTGLEC KWMDTRDVLI VNPTSSNQVD PDFGESEKRL DKWFSLNPSK IIIATGFIAS TPQNIPTTLK RDGSDFSAAI
301: MGALLRARQV TIWTDVDGVY SADPRKVNEA VILQTLSYQE AWEMSYFGAN VLHPRTIIPV MRYNIPIVIR NIFNLSAPGT IICQPPEDDY DLKLTTPVKG
401: FATIDNLALI NVEGTGMAGV PGTASDIFGC VKDVGANVIM ISQASSEHSV CFAVPEKEVN AVSEALRSRF SEALQAGRLS QIEVIPNCSI LAAVGQKMAS
501: TPGVSCTLFS ALAKANINVR AISQGCSEYN VTVVIKREDS VKALRAVHSR FFLSRTTLAM GIVGPGLIGA TLLDQLRDQA AVLKQEFNID LRVLGITGSK
601: KMLLSDIGID LSRWRELLNE KGTEADLDKF TQQVHGNHFI PNSVVVDCTA DSAIASRYYD WLRKGIHVIT PNKKANSGPL DQYLKLRDLQ RKSYTHYFYE
701: ATVGAGLPII STLRGLLETG DKILRIEGIC SGTLSYLFNN FVGDRSFSEV VTEAKNAGFT EPDPRDDLSG TDVARKVIIL ARESGLKLDL ADLPIRSLVP
801: EPLKGCTSVE EFMEKLPQYD GDLAKERLDA ENSGEVLRYV GVVDAVNQKG TVELRRYKKE HPFAQLAGSD NIIAFTTTRY KDHPLIVRGP GAGAQVTAGG
901: IFSDILRLAS YLGAPS

Arabidopsis Description

AKHSDH2Bifunctional aspartokinase/homoserine dehydrogenase 2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:O81852]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.