Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum
Predictor Summary:
Predictor Summary:
- endoplasmic reticulum 8
- golgi 5
- extracellular 5
- vacuole 4
- plasma membrane 4
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY21086 | Canola | endoplasmic reticulum, golgi | 69.38 | 88.22 |
| Bra016739.1-P | Field mustard | cytosol, endoplasmic reticulum, nucleus | 79.96 | 86.86 |
| CDY34587 | Canola | endoplasmic reticulum, golgi, plasma membrane | 83.93 | 86.21 |
| AT1G13140.1 | Thale cress | endoplasmic reticulum | 82.8 | 82.02 |
| AT3G26125.1 | Thale cress | endoplasmic reticulum | 74.67 | 73.01 |
| VIT_03s0017g01070.t01 | Wine grape | endoplasmic reticulum, golgi | 53.31 | 56.63 |
| AT1G24540.1 | Thale cress | endoplasmic reticulum, golgi | 54.25 | 54.98 |
| VIT_01s0137g00410.t01 | Wine grape | endoplasmic reticulum, extracellular | 55.95 | 52.86 |
| GSMUA_Achr10P... | Banana | golgi, mitochondrion | 44.61 | 46.46 |
| EES07097 | Sorghum | golgi | 45.75 | 45.15 |
| Zm00001d050977_P001 | Maize | mitochondrion | 45.37 | 44.94 |
| TraesCS6D01G193600.1 | Wheat | golgi | 43.48 | 44.57 |
| Os02t0596300-01 | Rice | cytosol, peroxisome | 40.64 | 44.24 |
| HORVU6Hr1G053810.2 | Barley | endoplasmic reticulum | 43.29 | 43.54 |
| TraesCS6B01G239400.1 | Wheat | mitochondrion | 43.48 | 41.82 |
| TraesCS6A01G210500.1 | Wheat | mitochondrion | 40.26 | 41.28 |
| AT5G23190.1 | Thale cress | endoplasmic reticulum | 43.29 | 40.97 |
| AT5G08250.2 | Thale cress | endoplasmic reticulum | 41.21 | 39.64 |
| AT1G63710.1 | Thale cress | endoplasmic reticulum, golgi | 38.37 | 38.81 |
| AT4G00360.1 | Thale cress | endoplasmic reticulum | 40.26 | 38.52 |
| AT5G58860.1 | Thale cress | endoplasmic reticulum | 37.24 | 38.4 |
| AT1G01600.1 | Thale cress | endoplasmic reticulum | 40.08 | 38.27 |
| AT2G45970.1 | Thale cress | endoplasmic reticulum, golgi | 38.56 | 37.99 |
| AT1G34540.1 | Thale cress | endoplasmic reticulum | 34.4 | 36.55 |
| AT3G56630.1 | Thale cress | endoplasmic reticulum | 33.84 | 35.87 |
| AT3G01900.1 | Thale cress | endoplasmic reticulum | 32.7 | 34.88 |
| AT2G27690.1 | Thale cress | endoplasmic reticulum | 32.51 | 34.75 |
| AT3G48520.1 | Thale cress | endoplasmic reticulum | 32.51 | 33.99 |
| AT5G63450.2 | Thale cress | endoplasmic reticulum, plasma membrane, plastid | 33.27 | 30.99 |
Protein Annotations
| Gene3D:1.10.630.10 | MapMan:50.1.13 | EntrezGene:837873 | ProteinID:AAD31067.1 | ProteinID:AEE28976.1 | ArrayExpress:AT1G13150 |
| EnsemblPlantsGene:AT1G13150 | RefSeq:AT1G13150 | TAIR:AT1G13150 | RefSeq:AT1G13150-TAIR-G | EnsemblPlants:AT1G13150.1 | TAIR:AT1G13150.1 |
| Unigene:At.42044 | Symbol:CYP86C4 | InterPro:Cyt_P450 | InterPro:Cyt_P450_CS | InterPro:Cyt_P450_E_grp-I | InterPro:Cyt_P450_sf |
| GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004497 | GO:GO:0005488 | GO:GO:0005506 | GO:GO:0005575 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0016491 | GO:GO:0016705 |
| GO:GO:0020037 | GO:GO:0046872 | GO:GO:0055114 | InterPro:IPR036396 | RefSeq:NP_172774.1 | PFAM:PF00067 |
| PO:PO:0000293 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 |
| PO:PO:0025022 | PRINTS:PR00385 | PRINTS:PR00463 | ScanProsite:PS00086 | PANTHER:PTHR24296 | PANTHER:PTHR24296:SF2 |
| UniProt:Q9SAE8 | SUPFAM:SSF48264 | TMHMM:TMhelix | UniParc:UPI000009F870 | SEG:seg | : |
Description
CYP86C4Cytochrome P450, family 86, subfamily C, polypeptide 4 [Source:UniProtKB/TrEMBL;Acc:Q9SAE8]
Coordinates
chr1:-:4481875..4483751
Molecular Weight (calculated)
61335.8 Da
IEP (calculated)
8.150
GRAVY (calculated)
-0.071
Length
529 amino acids
Sequence
(BLAST)
(BLAST)
001: MSLTERLYNH LSLFDLLLSL LGLFVFCCLR EKLTNKRGPM LWPVFGITLE FFFHINDVYG WVTRSLKKCR GTFLYRGVWL DGSYGAVTCV PANVEYMLKT
101: NFKNFPKGTF FKSRFNDLLE EGIFNADDDS WKEQRRIIIT EMHSTGFVEH SFQTTQHLVR KKLLKVMESF AKSQEAFDLQ DVFLRLTFDI ICLAGLGADP
201: ETLAVDLPQV PFAKAFEEAT ESTLFRFMIP PFIWKPMRFL DTGYEKGLRI AVGVVHGFVD KMIVDRICEL KEEETLDNRS DVLSRIIQIE SHKRENEIDP
301: STIRFFRQFC TSFILAGRDT SSVALSWFCW VIQKHPEVEN KIICEIREIL RQRGDSPTSK NESLFTVKEL NNMVYLQAAL SETLRLFPPI PMEMKQAIED
401: DVLPDGTFVR KGSRVYFSIY AMGRMESIWG KDCEIFRPER WIQAGKFVSD DQFKYVVFNA GPRLCIGKTF AYLQMKMIAA SVLLRYSIKV VQDHVIAPRV
501: TTNLYMKYGL KVTITPRSLE EKKLESCSM
101: NFKNFPKGTF FKSRFNDLLE EGIFNADDDS WKEQRRIIIT EMHSTGFVEH SFQTTQHLVR KKLLKVMESF AKSQEAFDLQ DVFLRLTFDI ICLAGLGADP
201: ETLAVDLPQV PFAKAFEEAT ESTLFRFMIP PFIWKPMRFL DTGYEKGLRI AVGVVHGFVD KMIVDRICEL KEEETLDNRS DVLSRIIQIE SHKRENEIDP
301: STIRFFRQFC TSFILAGRDT SSVALSWFCW VIQKHPEVEN KIICEIREIL RQRGDSPTSK NESLFTVKEL NNMVYLQAAL SETLRLFPPI PMEMKQAIED
401: DVLPDGTFVR KGSRVYFSIY AMGRMESIWG KDCEIFRPER WIQAGKFVSD DQFKYVVFNA GPRLCIGKTF AYLQMKMIAA SVLLRYSIKV VQDHVIAPRV
501: TTNLYMKYGL KVTITPRSLE EKKLESCSM
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.