Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- plastid 1
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT1G53070.1 | Thale cress | extracellular | 64.46 | 57.35 |
| AT1G53080.1 | Thale cress | extracellular | 63.64 | 54.42 |
| AT5G03350.1 | Thale cress | extracellular | 59.92 | 52.92 |
| AT3G16530.1 | Thale cress | extracellular | 51.24 | 44.93 |
| AT3G15356.1 | Thale cress | extracellular | 49.17 | 43.91 |
| HORVU2Hr1G043510.1 | Barley | extracellular | 23.55 | 22.01 |
| HORVU5Hr1G036880.1 | Barley | cytosol | 15.29 | 20.33 |
| HORVU3Hr1G113660.1 | Barley | extracellular, vacuole | 26.03 | 18.48 |
| GSMUA_Achr6P33000_001 | Banana | golgi | 25.62 | 18.08 |
| HORVU7Hr1G009980.1 | Barley | endoplasmic reticulum, extracellular, plasma membrane | 24.38 | 17.3 |
| HORVU2Hr1G099010.1 | Barley | cytosol | 17.36 | 11.7 |
| HORVU1Hr1G013700.1 | Barley | plastid, vacuole | 26.86 | 8.56 |
Protein Annotations
| Gene3D:2.60.120.200 | MapMan:35.1 | EntrezGene:841740 | UniProt:A0A178WLQ6 | ProteinID:AAF87862.1 | ProteinID:AEE32885.1 |
| ArrayExpress:AT1G53060 | EnsemblPlantsGene:AT1G53060 | RefSeq:AT1G53060 | TAIR:AT1G53060 | RefSeq:AT1G53060-TAIR-G | EnsemblPlants:AT1G53060.1 |
| TAIR:AT1G53060.1 | InterPro:ConA-like_dom_sf | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0008150 | GO:GO:0030246 |
| InterPro:L-lectin | InterPro:Legume_lectin_dom | RefSeq:NP_175714.1 | ProteinID:OAP18851.1 | PFAM:PF00139 | PIRSF:PIRSF002690 |
| PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 |
| PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 |
| PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 |
| PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 |
| PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 |
| PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PANTHER:PTHR32401 |
| PANTHER:PTHR32401:SF5 | UniProt:Q9LNN1 | SUPFAM:SSF49899 | UniParc:UPI000004838F | SEG:seg | : |
Description
Lectin-like protein At1g53060 [Source:UniProtKB/Swiss-Prot;Acc:Q9LNN1]
Coordinates
chr1:+:19775923..19777030
Molecular Weight (calculated)
27012.8 Da
IEP (calculated)
9.836
GRAVY (calculated)
-0.520
Length
242 amino acids
Sequence
(BLAST)
(BLAST)
001: MTFHGDAEYA SEPDGMSKSG AIGLSRDNVP FSHGRAIFIN PVPFKPSSTS SSVYSFKTSF YFVISPRPKN PNPGHGLAFI IVPNDRNDSA SGLGYLSLVN
101: RFSNGNPKNH LFAVEFDVFK DKSLGDINDN HIGINNNSVN STVSKKAGYW YQSKIEGKNR WLFKELKLSG NGYRAWIEYE NGKVTVTIGR SQEKPKRPLI
201: EARVDLSKVF LEKMYVGFAG SMGRGVERHE ILDWSFENSA KD
101: RFSNGNPKNH LFAVEFDVFK DKSLGDINDN HIGINNNSVN STVSKKAGYW YQSKIEGKNR WLFKELKLSG NGYRAWIEYE NGKVTVTIGR SQEKPKRPLI
201: EARVDLSKVF LEKMYVGFAG SMGRGVERHE ILDWSFENSA KD
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.