Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- endoplasmic reticulum 5
- golgi 5
- extracellular 7
- vacuole 4
- plasma membrane 4
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY24118 | Canola | extracellular | 88.34 | 88.97 |
| Bra019014.1-P | Field mustard | extracellular | 87.28 | 87.9 |
| AT5G03350.1 | Thale cress | extracellular | 62.54 | 64.6 |
| AT1G53060.1 | Thale cress | cytosol, nucleus, plastid | 54.42 | 63.64 |
| AT1G53070.1 | Thale cress | extracellular | 60.42 | 62.87 |
| AT3G16530.1 | Thale cress | extracellular | 60.78 | 62.32 |
| AT3G15356.1 | Thale cress | extracellular | 55.12 | 57.56 |
| HORVU2Hr1G043510.1 | Barley | extracellular | 24.73 | 27.03 |
| HORVU5Hr1G036880.1 | Barley | cytosol | 15.9 | 24.73 |
| HORVU3Hr1G113660.1 | Barley | extracellular, vacuole | 26.86 | 22.29 |
| HORVU7Hr1G009980.1 | Barley | endoplasmic reticulum, extracellular, plasma membrane | 26.15 | 21.7 |
| GSMUA_Achr6P33000_001 | Banana | golgi | 26.15 | 21.57 |
| HORVU2Hr1G099010.1 | Barley | cytosol | 17.31 | 13.65 |
| HORVU1Hr1G013700.1 | Barley | plastid, vacuole | 28.27 | 10.54 |
Protein Annotations
| MapMan:18.4.1.19 | Gene3D:2.60.120.200 | EntrezGene:841742 | UniProt:A0A178W3S1 | ProteinID:AAF87860.1 | ProteinID:AEE32887.1 |
| ArrayExpress:AT1G53080 | EnsemblPlantsGene:AT1G53080 | RefSeq:AT1G53080 | TAIR:AT1G53080 | RefSeq:AT1G53080-TAIR-G | EnsemblPlants:AT1G53080.1 |
| TAIR:AT1G53080.1 | InterPro:ConA-like_dom_sf | EMBL:DQ056494 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005575 |
| GO:GO:0005576 | GO:GO:0005618 | GO:GO:0005623 | GO:GO:0008150 | GO:GO:0009505 | GO:GO:0030246 |
| GO:GO:0030312 | GO:GO:0048046 | InterPro:L-lectin | InterPro:Legume_lectin_dom | RefSeq:NP_175716.1 | ProteinID:OAP13150.1 |
| PFAM:PF00139 | PIRSF:PIRSF002690 | PO:PO:0000293 | PO:PO:0009047 | PANTHER:PTHR32401 | PANTHER:PTHR32401:SF5 |
| UniProt:Q9LNN3 | SUPFAM:SSF49899 | SignalP:SignalP-noTM | UniParc:UPI0000048391 | SEG:seg | : |
Description
Lectin-like protein At1g53080 [Source:UniProtKB/Swiss-Prot;Acc:Q9LNN3]
Coordinates
chr1:+:19781288..19782352
Molecular Weight (calculated)
31833.6 Da
IEP (calculated)
9.731
GRAVY (calculated)
-0.330
Length
283 amino acids
Sequence
(BLAST)
(BLAST)
001: MQIHKLCIFV LFISLLSSKT ISAVKFNFNR FDGTNLIFIG YAELGPATDG MSRSGALSMT RDNIPFSHGQ GLYTDPIPFK SSNNTSSSVY SFKTSFTFSI
101: TPRRSNPNPG HGIAFIVVPT VAYEYDQDST RGFLGLVNLT TNGNPNNHLF AVEFDVFQDK RFGDINDNHV GVNINSVNSK VSEKAGYWIQ TRTRGKNQWL
201: FKEVKLSSGD NYKAWIEYKN SKVIVWLAPA HLKKPKRPLI ETQVDLSEVV LETMYTGFSG SMGRGVERHD IWSWSFENTA KNN
101: TPRRSNPNPG HGIAFIVVPT VAYEYDQDST RGFLGLVNLT TNGNPNNHLF AVEFDVFQDK RFGDINDNHV GVNINSVNSK VSEKAGYWIQ TRTRGKNQWL
201: FKEVKLSSGD NYKAWIEYKN SKVIVWLAPA HLKKPKRPLI ETQVDLSEVV LETMYTGFSG SMGRGVERHD IWSWSFENTA KNN
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.