Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- endoplasmic reticulum 5
- golgi 5
- extracellular 7
- vacuole 4
- plasma membrane 4
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT3G16530.1 | Thale cress | extracellular | 86.72 | 85.14 |
| CDY72663 | Canola | extracellular | 81.18 | 82.4 |
| Bra027257.1-P | Field mustard | extracellular | 83.39 | 81.88 |
| CDX97656 | Canola | extracellular | 83.39 | 81.88 |
| CDY21835 | Canola | extracellular | 83.03 | 81.52 |
| Bra021101.1-P | Field mustard | extracellular | 82.66 | 81.16 |
| CDY20121 | Canola | extracellular | 81.92 | 80.43 |
| AT5G03350.1 | Thale cress | extracellular | 61.62 | 60.95 |
| CDX75822 | Canola | plastid | 26.2 | 60.68 |
| AT1G53080.1 | Thale cress | extracellular | 57.56 | 55.12 |
| AT1G53070.1 | Thale cress | extracellular | 50.92 | 50.74 |
| AT1G53060.1 | Thale cress | cytosol, nucleus, plastid | 43.91 | 49.17 |
| HORVU2Hr1G043510.1 | Barley | extracellular | 25.09 | 26.25 |
| HORVU3Hr1G113660.1 | Barley | extracellular, vacuole | 25.46 | 20.23 |
| GSMUA_Achr6P33000_001 | Banana | golgi | 25.09 | 19.83 |
| HORVU7Hr1G009980.1 | Barley | endoplasmic reticulum, extracellular, plasma membrane | 24.72 | 19.65 |
| HORVU5Hr1G036880.1 | Barley | cytosol | 11.44 | 17.03 |
| HORVU2Hr1G099010.1 | Barley | cytosol | 13.65 | 10.31 |
| HORVU1Hr1G013700.1 | Barley | plastid, vacuole | 27.31 | 9.75 |
Protein Annotations
| MapMan:18.4.1.19 | Gene3D:2.60.120.200 | EntrezGene:820768 | UniProt:A0A178VCY2 | ProteinID:AEE75649.1 | ArrayExpress:AT3G15356 |
| EnsemblPlantsGene:AT3G15356 | RefSeq:AT3G15356 | TAIR:AT3G15356 | RefSeq:AT3G15356-TAIR-G | EnsemblPlants:AT3G15356.1 | TAIR:AT3G15356.1 |
| EMBL:AY140015 | Unigene:At.24886 | ProteinID:BAB02166.1 | EMBL:BT020320 | EMBL:BT021923 | InterPro:ConA-like_dom_sf |
| GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005576 | GO:GO:0005618 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0006950 | GO:GO:0006952 | GO:GO:0007154 | GO:GO:0007165 | GO:GO:0008150 |
| GO:GO:0009605 | GO:GO:0009607 | GO:GO:0009611 | GO:GO:0009719 | GO:GO:0009817 | GO:GO:0009873 |
| GO:GO:0009987 | GO:GO:0030246 | GO:GO:0030312 | GO:GO:0048046 | GO:GO:0071323 | GO:GO:0071369 |
| GO:GO:0071395 | InterPro:L-lectin | InterPro:Legume_lectin_dom | RefSeq:NP_683568.1 | ProteinID:OAP03511.1 | PFAM:PF00139 |
| PIRSF:PIRSF002690 | PO:PO:0000014 | PO:PO:0000293 | PO:PO:0009001 | PO:PO:0009005 | PO:PO:0009046 |
| PO:PO:0009064 | PO:PO:0009073 | PO:PO:0020138 | PANTHER:PTHR32401 | PANTHER:PTHR32401:SF5 | UniProt:Q9LJR2 |
| SUPFAM:SSF49899 | SignalP:SignalP-noTM | UniParc:UPI00000A2F2B | EMBL:X91259 | SEG:seg | : |
Description
LECLectin-like protein LEC [Source:UniProtKB/Swiss-Prot;Acc:Q9LJR2]
Coordinates
chr3:-:5174402..5175523
Molecular Weight (calculated)
29751.0 Da
IEP (calculated)
9.378
GRAVY (calculated)
-0.290
Length
271 amino acids
Sequence
(BLAST)
(BLAST)
001: MQIHKLCFLA LFLANAAFAV KFNFDSFDGS NLLFLGDAEL GPSSDGVSRS GALSMTRDET PFSHGQGLYI NPIQFKSSNT SSPFDFKTSF TFSITPRTKP
101: NSGQGLAFVI VPAADNSGAS GGGYLGILNK TNDGKSENNL IFIEFDTFKN NESNDISGNH VGININSMTS LVAEKAGYWV QTLVGKRKVW SFKDVNLSSG
201: ERFKAWIEFR SKDSRNTITI APENVKKPKR PLIQGSRVLN DVLLQNMYAG FAGSMGRAGE RHDVWSWSFE N
101: NSGQGLAFVI VPAADNSGAS GGGYLGILNK TNDGKSENNL IFIEFDTFKN NESNDISGNH VGININSMTS LVAEKAGYWV QTLVGKRKVW SFKDVNLSSG
201: ERFKAWIEFR SKDSRNTITI APENVKKPKR PLIQGSRVLN DVLLQNMYAG FAGSMGRAGE RHDVWSWSFE N
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.