Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra034123.1-P | Field mustard | cytosol | 77.34 | 78.57 |
| CDY41357 | Canola | cytosol | 76.56 | 77.78 |
| CDY00678 | Canola | nucleus | 76.56 | 76.56 |
| Bra001367.1-P | Field mustard | nucleus | 72.66 | 75.61 |
| CDX73919 | Canola | nucleus | 72.66 | 75.61 |
| Bra029848.1-P | Field mustard | cytosol | 75.78 | 75.19 |
| CDY08597 | Canola | cytosol | 75.78 | 75.19 |
| AT5G04470.1 | Thale cress | cytosol | 57.03 | 57.48 |
| CDY00950 | Canola | plastid | 76.56 | 55.68 |
Protein Annotations
| MapMan:13.1.1.3.2 | EntrezGene:820217 | UniProt:A0A178V8H0 | ProteinID:AAF76354.1 | ProteinID:AEE74920.1 | EMBL:AK118323 |
| ArrayExpress:AT3G10525 | EnsemblPlantsGene:AT3G10525 | RefSeq:AT3G10525 | TAIR:AT3G10525 | RefSeq:AT3G10525-TAIR-G | EnsemblPlants:AT3G10525.1 |
| TAIR:AT3G10525.1 | EMBL:AY086115 | EMBL:BT024579 | GO:GO:0003674 | GO:GO:0004860 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 |
| GO:GO:0006259 | GO:GO:0006464 | GO:GO:0006469 | GO:GO:0006950 | GO:GO:0007049 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009605 | GO:GO:0009607 | GO:GO:0009987 | GO:GO:0019538 |
| GO:GO:0030154 | GO:GO:0030234 | GO:GO:0032877 | GO:GO:0042742 | GO:GO:0090393 | Symbol:LGO |
| RefSeq:NP_566377.1 | ProteinID:OAP01242.1 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000191 | PO:PO:0000230 |
| PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 |
| PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 |
| PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 |
| PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 |
| PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 |
| PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025281 | PANTHER:PTHR33142 | PANTHER:PTHR33142:SF13 | UniProt:Q9LPP4 |
| UniParc:UPI00000A3761 | SEG:seg | : | : | : | : |
Description
SMR1SMR1 [Source:UniProtKB/TrEMBL;Acc:A0A178V8H0]
Coordinates
chr3:-:3281306..3282131
Molecular Weight (calculated)
14614.4 Da
IEP (calculated)
9.599
GRAVY (calculated)
-0.906
Length
128 amino acids
Sequence
(BLAST)
(BLAST)
001: MDLELLQDLS KFNFPTPIKI RSKTSKTKKD EGDDDEDDLR CSTPTSQEHK IPAVVDSPPP PPRKPRPPPS APSATAALMI RSCKRKLLVS TCEIIMNREE
101: IDRFFSSVYN ETSTTAKRRR SYPYCSRR
101: IDRFFSSVYN ETSTTAKRRR SYPYCSRR
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.