Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
- cytosol 2
- mitochondrion 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra034123.1-P | Field mustard | cytosol | 97.62 | 97.62 |
| CDY00678 | Canola | nucleus | 85.71 | 84.38 |
| CDX73919 | Canola | nucleus | 80.16 | 82.11 |
| AT3G10525.1 | Thale cress | cytosol | 77.78 | 76.56 |
| CDY08597 | Canola | cytosol | 76.98 | 75.19 |
| CDY00950 | Canola | plastid | 76.98 | 55.11 |
| CDY04913 | Canola | nucleus | 53.17 | 51.94 |
| CDY14155 | Canola | nucleus | 52.38 | 51.16 |
| CDY44858 | Canola | nucleus | 50.79 | 48.12 |
| CDX70222 | Canola | nucleus | 50.0 | 47.37 |
| CDY11293 | Canola | nucleus | 49.21 | 46.62 |
| CDY58442 | Canola | nucleus | 49.21 | 46.62 |
Protein Annotations
| EnsemblPlants:CDY41357 | EnsemblPlantsGene:GSBRNA2T00072918001 | PANTHER:PTHR33142 | PANTHER:PTHR33142:SF13 | ProteinID:CDY41357 | ProteinID:CDY41357.1 |
| SEG:seg | UniParc:UPI0004EED08F | UniProt:A0A078HU25 | MapMan:13.1.1.3.2 | : | : |
Description
BnaA01g31620DBnaA01g31620D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HU25]
Coordinates
chrLK032495:-:253543..254046
Molecular Weight (calculated)
14272.0 Da
IEP (calculated)
9.720
GRAVY (calculated)
-0.767
Length
126 amino acids
Sequence
(BLAST)
(BLAST)
001: MDLDLLQDLS KFNFPATIKI QSKTTRNINE GDEEDGFSCS TPTSQEHKIP PVLDSPPPPP RKPRPQPSKP SATAALMIRS CKRKLLVSTC EVIMNREDID
101: RFFTSVYSDT STTAKRRRSY PSCVRR
101: RFFTSVYSDT STTAKRRRSY PSCVRR
001: MDLELLQDLS KFNFPTPIKI RSKTSKTKKD EGDDDEDDLR CSTPTSQEHK IPAVVDSPPP PPRKPRPPPS APSATAALMI RSCKRKLLVS TCEIIMNREE
101: IDRFFSSVYN ETSTTAKRRR SYPYCSRR
101: IDRFFSSVYN ETSTTAKRRR SYPYCSRR
Arabidopsis Description
SMR1SMR1 [Source:UniProtKB/TrEMBL;Acc:A0A178V8H0]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.