Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- plastid 1
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY58442 | Canola | nucleus | 97.74 | 97.74 |
| CDY14155 | Canola | nucleus | 78.2 | 80.62 |
| CDY04913 | Canola | nucleus | 77.44 | 79.84 |
| CDX70222 | Canola | nucleus | 78.2 | 78.2 |
| CDY44858 | Canola | nucleus | 77.44 | 77.44 |
| AT5G04470.1 | Thale cress | cytosol | 71.43 | 74.8 |
| Bra005808.1-P | Field mustard | nucleus | 79.7 | 68.39 |
| CDX73919 | Canola | nucleus | 46.62 | 50.41 |
| CDY41357 | Canola | cytosol | 46.62 | 49.21 |
| CDY00678 | Canola | nucleus | 45.86 | 47.66 |
| CDY08597 | Canola | cytosol | 45.86 | 47.29 |
| CDY00950 | Canola | plastid | 45.86 | 34.66 |
Protein Annotations
| EnsemblPlants:CDY11293 | EnsemblPlantsGene:GSBRNA2T00049330001 | PANTHER:PTHR33142 | PANTHER:PTHR33142:SF13 | ProteinID:CDY11293 | ProteinID:CDY11293.1 |
| SEG:seg | UniParc:UPI0004EDE8D6 | UniProt:A0A078FGT6 | MapMan:35.2 | : | : |
Description
BnaA03g01290DBnaA03g01290D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FGT6]
Coordinates
chrLK032010:-:608852..609423
Molecular Weight (calculated)
14782.6 Da
IEP (calculated)
11.035
GRAVY (calculated)
-0.781
Length
133 amino acids
Sequence
(BLAST)
(BLAST)
001: MNLDLIQDLP MLKFPSPIKI PSNNTNRDDD GSSGGCTTPT SSDHKIPPST ATTPPPPPQK RRPPPSPSCF IRSCKRKLLT PSKVEIIVNK DEIERFFSSV
101: YNHSTTSSPT TTTTKTALAV VRRRRSFRSC SRR
101: YNHSTTSSPT TTTTKTALAV VRRRRSFRSC SRR
001: MDLDLIQDLP ILNFPPAIKI RANTNRDDDG GGCTTPTSSD HKIPPTTATT PPPPPQKPRP PSTPSSLGIR SCKRKLMTSL SKYEIIVNKD EIERFFSSVY
101: NQTMASSTTT AITVAKRRRS FRSCSRR
101: NQTMASSTTT AITVAKRRRS FRSCSRR
Arabidopsis Description
SIMCyclin-dependent protein kinase inhibitor SIM [Source:UniProtKB/Swiss-Prot;Acc:Q9LZ78]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.