CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX76164
CDX77145
CDX86537
CDY10170
CDY10634
CDY13189
CDY15560
CDY30517
CDY37406
CDY37408
CDY47713

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G10525.1	CDX86537	AT1G06070.1	20706207
AT3G10525.1	CDY10170	AT1G06070.1	20706207
AT3G10525.1	CDY15560	AT1G06070.1	20706207
AT3G10525.1	CDY47713	AT1G06070.1	20706207
AT3G10525.1	CDX77145	AT2G27970.1	20706207
AT3G10525.1	CDY30517	AT2G27970.1	20706207
AT3G10525.1	CDY10634	AT3G22310.1	20706207
AT3G10525.1	CDY37406	AT3G22310.1	20706207
AT3G10525.1	CDY37408	AT3G22310.1	20706207
AT3G10525.1	CDX76164	AT3G54180.1	20706207
AT3G10525.1	CDY13189	AT3G54180.1	20706207

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra029848.1-P	Field mustard	cytosol	100.0	100.0
CDY41357	Canola	cytosol	75.19	76.98
AT3G10525.1	Thale cress	cytosol	75.19	75.78
CDY00678	Canola	nucleus	75.19	75.78
CDX73919	Canola	nucleus	71.32	74.8
CDY00950	Canola	plastid	96.9	71.02
CDY04913	Canola	nucleus	55.04	55.04
CDY14155	Canola	nucleus	54.26	54.26
CDY44858	Canola	nucleus	49.61	48.12
CDX70222	Canola	nucleus	48.84	47.37
CDY11293	Canola	nucleus	47.29	45.86
CDY58442	Canola	nucleus	47.29	45.86

Protein Annotations

EnsemblPlants:CDY08597	EnsemblPlantsGene:GSBRNA2T00000388001	PANTHER:PTHR33142	PANTHER:PTHR33142:SF13	ProteinID:CDY08597	ProteinID:CDY08597.1
SEG:seg	UniParc:UPI0000E6499F	UniProt:A0A078F681	MapMan:13.1.1.3.2	:	:

Description

BnaA05g28330DBnaA05g28330D protein [Source:UniProtKB/TrEMBL;Acc:A0A078F681]

Coordinates

chrLK031986:+:849626..850607

Molecular Weight (calculated)

14537.2 Da

IEP (calculated)

9.578

GRAVY (calculated)

-0.840

Length

129 amino acids

Sequence
(BLAST)

001: MDDLELLQDL SQFNFPATIK IPSKTSKDNK DGDGDNDEGF SCSTPTSQEH KIPSVHDSPP PPPRKPRALP SKPSPTAALV IRSCKRKLLV SAPEIIMNKE
101: EIDRFFSSVY SDTSTTAKRR RRYLYCARR

Best Arabidopsis Sequence Match ( AT3G10525.1 )
(BLAST)

001: MDLELLQDLS KFNFPTPIKI RSKTSKTKKD EGDDDEDDLR CSTPTSQEHK IPAVVDSPPP PPRKPRPPPS APSATAALMI RSCKRKLLVS TCEIIMNREE
101: IDRFFSSVYN ETSTTAKRRR SYPYCSRR

Arabidopsis Description

SMR1SMR1 [Source:UniProtKB/TrEMBL;Acc:A0A178V8H0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.