CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX68497
CDX76164
CDX77145
CDX80598
CDX83047
CDX87018
CDX88247
CDX89414
CDX89437
CDX92717
CDX94441
CDY03368
CDY05546
CDY05870
CDY07260
CDY13189
CDY25328
CDY30517
CDY47165
CDY50198
CDY52363
CDY54086
CDY66197
CDY66499
CDY67496

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G04470.1	CDY07260	AT1G61870.1	20706207
AT5G04470.1	CDY25328	AT1G61870.1	20706207
AT5G04470.1	CDY47165	AT1G61870.1	20706207
AT5G04470.1	CDX77145	AT2G27970.1	20706207
AT5G04470.1	CDY30517	AT2G27970.1	20706207
AT5G04470.1	CDX68497	AT3G48750.1	17098811
AT5G04470.1	CDX83047	AT3G48750.1	17098811
AT5G04470.1	CDX87018	AT3G48750.1	17098811
AT5G04470.1	CDY05870	AT3G48750.1	17098811
AT5G04470.1	CDY66197	AT3G48750.1	17098811
AT5G04470.1	CDY67496	AT3G48750.1	17098811
AT5G04470.1	CDX76164	AT3G54180.1	20706207
AT5G04470.1	CDY13189	AT3G54180.1	20706207
AT5G04470.1	CDX89437	AT4G25200.1	21798944
AT5G04470.1	CDY03368	AT4G25200.1	21798944
AT5G04470.1	CDX89414	AT4G25550.1	20706207
AT5G04470.1	CDX92717	AT4G25550.1	20706207
AT5G04470.1	CDX94441	AT4G25550.1	20706207
AT5G04470.1	CDY50198	AT4G25550.1	20706207
AT5G04470.1	CDY52363	AT4G25550.1	20706207
AT5G04470.1	CDY54086	AT4G25550.1	20706207
AT5G04470.1	CDX80598	AT5G26860.1	20706207
AT5G04470.1	CDX88247	AT5G26860.1	20706207
AT5G04470.1	CDY05546	AT5G26860.1	20706207
AT5G04470.1	CDY66499	AT5G26860.1	20706207

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra009451.1-P	Field mustard	nucleus	100.0	100.0
CDY44858	Canola	nucleus	97.74	97.74
CDY04913	Canola	nucleus	77.44	79.84
CDY14155	Canola	nucleus	76.69	79.07
CDY11293	Canola	nucleus	78.2	78.2
CDY58442	Canola	nucleus	78.2	78.2
AT5G04470.1	Thale cress	cytosol	73.68	77.17
CDY41357	Canola	cytosol	47.37	50.0
CDX73919	Canola	nucleus	45.86	49.59
CDY08597	Canola	cytosol	47.37	48.84
CDY00678	Canola	nucleus	45.86	47.66
CDY00950	Canola	plastid	47.37	35.8

Protein Annotations

EnsemblPlants:CDX70222	EnsemblPlantsGene:GSBRNA2T00136349001	PANTHER:PTHR33142	PANTHER:PTHR33142:SF13	ProteinID:CDX70222	ProteinID:CDX70222.1
SEG:seg	UniParc:UPI0001BA51FE	MapMan:35.1	:	:	:

Description

BnaA10g25710D

Coordinates

chrLK031790:+:3623880..3624357

Molecular Weight (calculated)

14761.7 Da

IEP (calculated)

11.213

GRAVY (calculated)

-0.699

Length

133 amino acids

Sequence
(BLAST)

001: MDIGLIQDLP MLNFPSPIKI RSNIDDDGNS GGCTTPTSSH HKIPPLTATT PPPPPQKRRP PPTPSSLVRS CKRKLMTSSK FEIIVNKDEI DRFFSSVYNQ
101: RVTSSPTTTT TTTTTTALTV SKRRRSFRSC SRK

Best Arabidopsis Sequence Match ( AT5G04470.1 )
(BLAST)

001: MDLDLIQDLP ILNFPPAIKI RANTNRDDDG GGCTTPTSSD HKIPPTTATT PPPPPQKPRP PSTPSSLGIR SCKRKLMTSL SKYEIIVNKD EIERFFSSVY
101: NQTMASSTTT AITVAKRRRS FRSCSRR

Arabidopsis Description

SIMCyclin-dependent protein kinase inhibitor SIM [Source:UniProtKB/Swiss-Prot;Acc:Q9LZ78]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.