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Field mustard
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Field mustard
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 4
  • cytosol 1
  • mitochondrion 1
  • plastid 1
Predictors GFP MS/MS Papers
Winner Takes All:nucleus
Any Predictor:cytosol, mitochondrion, nucleus, plastid
BaCelLo:nucleus
MultiLoc:cytosol
Plant-mPloc:nucleus
Predotar:plastid
PProwler:mitochondrion
WoLF PSORT:nucleus
YLoc:nucleus
PPI

Inferred distinct locusB in Crop

locusBlocations
Bra009924.1-P
Bra010457.1-P
Bra013872.1-P
Bra013899.1-P
Bra014835.1-P
Bra018036.1-P
Bra019155.1-P
Bra020562.1-P
Bra028380.1-P
Bra029917.1-P
Bra034380.1-P

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT5G04470.1 Bra028380.1-P AT1G61870.1 20706207
AT5G04470.1 Bra034380.1-P AT2G27970.1 20706207
AT5G04470.1 Bra018036.1-P AT3G48750.1 17098811
AT5G04470.1 Bra029917.1-P AT3G48750.1 17098811
AT5G04470.1 Bra014835.1-P AT3G54180.1 20706207
AT5G04470.1 Bra013872.1-P AT4G25200.1 21798944
AT5G04470.1 Bra010457.1-P AT4G25550.1 20706207
AT5G04470.1 Bra013899.1-P AT4G25550.1 20706207
AT5G04470.1 Bra019155.1-P AT4G25550.1 20706207
AT5G04470.1 Bra009924.1-P AT5G26860.1 20706207
AT5G04470.1 Bra020562.1-P AT5G26860.1 20706207
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDX70222 Canola nucleus 100.0 100.0
Bra028788.1-P Field mustard nucleus 77.44 79.84
AT5G04470.1 Thale cress cytosol 73.68 77.17
Bra005808.1-P Field mustard nucleus 66.17 56.77
Bra034123.1-P Field mustard cytosol 48.87 51.59
Bra029848.1-P Field mustard cytosol 47.37 48.84
Bra001367.1-P Field mustard nucleus 45.11 48.78
Protein Annotations
EnsemblPlants:Bra009451.1EnsemblPlants:Bra009451.1-PEnsemblPlantsGene:Bra009451PANTHER:PTHR33142PANTHER:PTHR33142:SF13SEG:seg
UniParc:UPI0001BA51FEUniProt:M4CZ04MapMan:35.1:::
Description
AT5G04470 (E=6e-027) SIM | SIM (SIAMESE); cyclin-dependent protein kinase inhibitor
Coordinates
chrA10:+:16701645..16702046
Molecular Weight (calculated)
14761.7 Da
IEP (calculated)
11.213
GRAVY (calculated)
-0.699
Length
133 amino acids
Sequence
(BLAST)
001: MDIGLIQDLP MLNFPSPIKI RSNIDDDGNS GGCTTPTSSH HKIPPLTATT PPPPPQKRRP PPTPSSLVRS CKRKLMTSSK FEIIVNKDEI DRFFSSVYNQ
101: RVTSSPTTTT TTTTTTALTV SKRRRSFRSC SRK
Best Arabidopsis Sequence Match ( AT5G04470.1 )
(BLAST)
001: MDLDLIQDLP ILNFPPAIKI RANTNRDDDG GGCTTPTSSD HKIPPTTATT PPPPPQKPRP PSTPSSLGIR SCKRKLMTSL SKYEIIVNKD EIERFFSSVY
101: NQTMASSTTT AITVAKRRRS FRSCSRR
Arabidopsis Description
SIMCyclin-dependent protein kinase inhibitor SIM [Source:UniProtKB/Swiss-Prot;Acc:Q9LZ78]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.