Factsheet for Bra005808.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 1
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
ChloroP:	plastid
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra009924.1-P
Bra010457.1-P
Bra013872.1-P
Bra013899.1-P
Bra014835.1-P
Bra018036.1-P
Bra019155.1-P
Bra020562.1-P
Bra028380.1-P
Bra029917.1-P
Bra034380.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G04470.1	Bra028380.1-P	AT1G61870.1	20706207
AT5G04470.1	Bra034380.1-P	AT2G27970.1	20706207
AT5G04470.1	Bra018036.1-P	AT3G48750.1	17098811
AT5G04470.1	Bra029917.1-P	AT3G48750.1	17098811
AT5G04470.1	Bra014835.1-P	AT3G54180.1	20706207
AT5G04470.1	Bra013872.1-P	AT4G25200.1	21798944
AT5G04470.1	Bra010457.1-P	AT4G25550.1	20706207
AT5G04470.1	Bra013899.1-P	AT4G25550.1	20706207
AT5G04470.1	Bra019155.1-P	AT4G25550.1	20706207
AT5G04470.1	Bra009924.1-P	AT5G26860.1	20706207
AT5G04470.1	Bra020562.1-P	AT5G26860.1	20706207

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY11293	Canola	nucleus	68.39	79.7
CDY58442	Canola	nucleus	66.45	77.44
Bra009451.1-P	Field mustard	nucleus	56.77	66.17
AT5G04470.1	Thale cress	cytosol	52.9	64.57
Bra028788.1-P	Field mustard	nucleus	53.55	64.34
Bra001367.1-P	Field mustard	nucleus	37.42	47.15
Bra034123.1-P	Field mustard	cytosol	38.06	46.83
Bra029848.1-P	Field mustard	cytosol	37.42	44.96

Protein Annotations

EnsemblPlants:Bra005808.1	EnsemblPlants:Bra005808.1-P	EnsemblPlantsGene:Bra005808	PANTHER:PTHR33142	PANTHER:PTHR33142:SF13	SEG:seg
UniParc:UPI000253FBF0	UniProt:M4CNM0	MapMan:35.2	:	:	:

Description

AT5G04470 (E=6e-009) SIM | SIM (SIAMESE); cyclin-dependent protein kinase inhibitor

Coordinates

chrA03:-:738549..739334

Molecular Weight (calculated)

17336.8 Da

IEP (calculated)

9.472

GRAVY (calculated)

-0.726

Length

155 amino acids

Sequence
(BLAST)

001: MNLDLIQDLP MLKFPSPIKI PSNNTNRDDD GSSGGCTTPT SSDHKIPPST ATTPPPPPQK RRPPPSPSCF IRSCKRKLLT PSKVEIIVNK DEIERFFSSV
101: YNHQGRPCLG FIVLCPRTPL TITQRRHPPQ QPPPKRLSRW LGDGEVSVLV HEDDQ

Best Arabidopsis Sequence Match ( AT5G04470.1 )
(BLAST)

001: MDLDLIQDLP ILNFPPAIKI RANTNRDDDG GGCTTPTSSD HKIPPTTATT PPPPPQKPRP PSTPSSLGIR SCKRKLMTSL SKYEIIVNKD EIERFFSSVY
101: NQTMASSTTT AITVAKRRRS FRSCSRR

Arabidopsis Description

SIMCyclin-dependent protein kinase inhibitor SIM [Source:UniProtKB/Swiss-Prot;Acc:Q9LZ78]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.