Factsheet for Bra028788.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

extracellular 1
golgi 1
plasma membrane 1
endoplasmic reticulum 1
vacuole 1
cytosol 1
nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus, secretory
BaCelLo:	secretory
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra009924.1-P
Bra010457.1-P
Bra013872.1-P
Bra013899.1-P
Bra014835.1-P
Bra018036.1-P
Bra019155.1-P
Bra020562.1-P
Bra028380.1-P
Bra029917.1-P
Bra034380.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G04470.1	Bra028380.1-P	AT1G61870.1	20706207
AT5G04470.1	Bra034380.1-P	AT2G27970.1	20706207
AT5G04470.1	Bra018036.1-P	AT3G48750.1	17098811
AT5G04470.1	Bra029917.1-P	AT3G48750.1	17098811
AT5G04470.1	Bra014835.1-P	AT3G54180.1	20706207
AT5G04470.1	Bra013872.1-P	AT4G25200.1	21798944
AT5G04470.1	Bra010457.1-P	AT4G25550.1	20706207
AT5G04470.1	Bra013899.1-P	AT4G25550.1	20706207
AT5G04470.1	Bra019155.1-P	AT4G25550.1	20706207
AT5G04470.1	Bra009924.1-P	AT5G26860.1	20706207
AT5G04470.1	Bra020562.1-P	AT5G26860.1	20706207

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY04913	Canola	nucleus	100.0	100.0
CDY14155	Canola	nucleus	97.67	97.67
Bra009451.1-P	Field mustard	nucleus	79.84	77.44
AT5G04470.1	Thale cress	cytosol	75.19	76.38
Bra029848.1-P	Field mustard	cytosol	55.04	55.04
Bra034123.1-P	Field mustard	cytosol	52.71	53.97
Bra005808.1-P	Field mustard	nucleus	64.34	53.55
Bra001367.1-P	Field mustard	nucleus	49.61	52.03

Protein Annotations

EnsemblPlants:Bra028788.1	EnsemblPlants:Bra028788.1-P	EnsemblPlantsGene:Bra028788	PANTHER:PTHR33142	PANTHER:PTHR33142:SF13	SEG:seg
UniParc:UPI00025430A4	UniProt:M4EJ23	MapMan:35.2	:	:	:

Description

AT5G04470 (E=2e-018) SIM | SIM (SIAMESE); cyclin-dependent protein kinase inhibitor

Coordinates

chrA02:-:2054523..2054912

Molecular Weight (calculated)

14297.1 Da

IEP (calculated)

11.099

GRAVY (calculated)

-0.721

Length

129 amino acids

Sequence
(BLAST)

001: MDLDLLQDLP MLNFPSPIKI RSNNRDADGG GGGCTTPTSS DHKIPPSSAT TPPPPPQKRR ALPPSLVYRS CKRKLLTSSK FEIIANKDEI DRFFSSVYNQ
101: TMTSSPTTAT TSTLPVARRR RSFRSCSRR

Best Arabidopsis Sequence Match ( AT5G04470.1 )
(BLAST)

001: MDLDLIQDLP ILNFPPAIKI RANTNRDDDG GGCTTPTSSD HKIPPTTATT PPPPPQKPRP PSTPSSLGIR SCKRKLMTSL SKYEIIVNKD EIERFFSSVY
101: NQTMASSTTT AITVAKRRRS FRSCSRR

Arabidopsis Description

SIMCyclin-dependent protein kinase inhibitor SIM [Source:UniProtKB/Swiss-Prot;Acc:Q9LZ78]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.