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Field mustard
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Field mustard
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 4
  • cytosol 1
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:nucleus
Any Predictor:cytosol, mitochondrion, nucleus
BaCelLo:nucleus
MultiLoc:cytosol
Plant-mPloc:nucleus
PProwler:mitochondrion
WoLF PSORT:nucleus
YLoc:nucleus
PPI

Inferred distinct locusB in Crop

locusBlocations
Bra014835.1-P
Bra015471.1-P
Bra030637.1-P
Bra031349.1-P
Bra034380.1-P

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT3G10525.1 Bra015471.1-P AT1G06070.1 20706207
AT3G10525.1 Bra030637.1-P AT1G06070.1 20706207
AT3G10525.1 Bra034380.1-P AT2G27970.1 20706207
AT3G10525.1 Bra031349.1-P AT3G22310.1 20706207
AT3G10525.1 Bra014835.1-P AT3G54180.1 20706207
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDX73919 Canola nucleus 99.19 99.19
CDY00678 Canola nucleus 99.19 95.31
Bra034123.1-P Field mustard cytosol 82.11 80.16
AT3G10525.1 Thale cress cytosol 75.61 72.66
Bra029848.1-P Field mustard cytosol 74.8 71.32
Bra028788.1-P Field mustard nucleus 52.03 49.61
Bra009451.1-P Field mustard nucleus 48.78 45.11
Bra005808.1-P Field mustard nucleus 47.15 37.42
Protein Annotations
EnsemblPlants:Bra001367.1EnsemblPlants:Bra001367.1-PEnsemblPlantsGene:Bra001367PANTHER:PTHR33142PANTHER:PTHR33142:SF13SEG:seg
UniParc:UPI0002540698UniProt:M4CAY8MapMan:13.1.1.3.2:::
Description
AT3G10525 (E=4e-031) | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: SIM (SIAMESE); cyclin-dependent protein kinase inhibitor (TAIR:AT5G04470.1); Has 23 Blast hits to 23 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 19; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).
Coordinates
chrA03:-:16024729..16025100
Molecular Weight (calculated)
13992.6 Da
IEP (calculated)
8.655
GRAVY (calculated)
-0.900
Length
123 amino acids
Sequence
(BLAST)
001: MDLDLLQDLS KVNIPTTIKI PSKTSRNIND GDEENEDGIS CSTPTSEEHK IPSVLDSPPS PPRKPRPPPS EPSAAMMIRS CKRKLLVSTC EIITNREEID
101: RFFTSVYSDT AKRRRRYPHC PRR
Best Arabidopsis Sequence Match ( AT3G10525.1 )
(BLAST)
001: MDLELLQDLS KFNFPTPIKI RSKTSKTKKD EGDDDEDDLR CSTPTSQEHK IPAVVDSPPP PPRKPRPPPS APSATAALMI RSCKRKLLVS TCEIIMNREE
101: IDRFFSSVYN ETSTTAKRRR SYPYCSRR
Arabidopsis Description
SMR1SMR1 [Source:UniProtKB/TrEMBL;Acc:A0A178V8H0]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.