Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra001367.1-P | Field mustard | nucleus | 99.19 | 99.19 |
| CDY00678 | Canola | nucleus | 98.37 | 94.53 |
| CDY41357 | Canola | cytosol | 82.11 | 80.16 |
| AT3G10525.1 | Thale cress | cytosol | 75.61 | 72.66 |
| CDY08597 | Canola | cytosol | 74.8 | 71.32 |
| CDY00950 | Canola | plastid | 74.8 | 52.27 |
| CDY04913 | Canola | nucleus | 52.03 | 49.61 |
| CDY14155 | Canola | nucleus | 51.22 | 48.84 |
| CDY11293 | Canola | nucleus | 50.41 | 46.62 |
| CDY44858 | Canola | nucleus | 50.41 | 46.62 |
| CDY58442 | Canola | nucleus | 50.41 | 46.62 |
| CDX70222 | Canola | nucleus | 49.59 | 45.86 |
Protein Annotations
| EnsemblPlants:CDX73919 | EnsemblPlantsGene:GSBRNA2T00111646001 | PANTHER:PTHR33142 | PANTHER:PTHR33142:SF13 | ProteinID:CDX73919 | ProteinID:CDX73919.1 |
| SEG:seg | UniParc:UPI0004EEC588 | MapMan:13.1.1.3.2 | : | : | : |
Description
BnaA03g31280D
Coordinates
chrLK031800:+:544942..545568
Molecular Weight (calculated)
13993.6 Da
IEP (calculated)
8.332
GRAVY (calculated)
-0.900
Length
123 amino acids
Sequence
(BLAST)
(BLAST)
001: MDLDLLQDLS KVNIPTTIKI PSKTSRNIDD GDEENEDGIS CSTPTSEEHK IPSVLDSPPS PPRKPRPPPS EPSAAMMIRS CKRKLLVSTC EIITNREEID
101: RFFTSVYSDT AKRRRRYPHC PRR
101: RFFTSVYSDT AKRRRRYPHC PRR
001: MDLELLQDLS KFNFPTPIKI RSKTSKTKKD EGDDDEDDLR CSTPTSQEHK IPAVVDSPPP PPRKPRPPPS APSATAALMI RSCKRKLLVS TCEIIMNREE
101: IDRFFSSVYN ETSTTAKRRR SYPYCSRR
101: IDRFFSSVYN ETSTTAKRRR SYPYCSRR
Arabidopsis Description
SMR1SMR1 [Source:UniProtKB/TrEMBL;Acc:A0A178V8H0]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.