Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- nucleus 3
- plastid 3
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY08597 | Canola | cytosol | 71.02 | 96.9 |
| CDY41357 | Canola | cytosol | 55.11 | 76.98 |
| AT3G10525.1 | Thale cress | cytosol | 55.68 | 76.56 |
| CDY00678 | Canola | nucleus | 55.11 | 75.78 |
| CDX73919 | Canola | nucleus | 52.27 | 74.8 |
| CDY04913 | Canola | nucleus | 39.2 | 53.49 |
| CDY14155 | Canola | nucleus | 38.64 | 52.71 |
| CDY44858 | Canola | nucleus | 36.36 | 48.12 |
| CDX70222 | Canola | nucleus | 35.8 | 47.37 |
| CDY11293 | Canola | nucleus | 34.66 | 45.86 |
| CDY58442 | Canola | nucleus | 34.66 | 45.86 |
Protein Annotations
| EnsemblPlants:CDY00950 | EnsemblPlantsGene:GSBRNA2T00110959001 | PANTHER:PTHR33142 | PANTHER:PTHR33142:SF13 | ProteinID:CDY00950 | ProteinID:CDY00950.1 |
| SEG:seg | UniParc:UPI0004EE0508 | MapMan:13.1.1.3.2 | : | : | : |
Description
BnaC05g42500D
Coordinates
chrLK031923:-:276323..277330
Molecular Weight (calculated)
20207.9 Da
IEP (calculated)
10.204
GRAVY (calculated)
-0.881
Length
176 amino acids
Sequence
(BLAST)
(BLAST)
001: MRHSNFTHVC IYMYAKTQTH ITSPSTSNKF STSTQKRFSK HKHTFTDMDD LELFQDLSQF NFPATIKIPS KTSKDNKDGD GDNDEVFSCS TPTSQEHKIP
101: SVHDSPPPPP RKPRALPSKP SPTAALMIRS CKRKLLVSTP EIIMNKEEID RFFSSVYSDT STTAKRRRRY LYCARR
101: SVHDSPPPPP RKPRALPSKP SPTAALMIRS CKRKLLVSTP EIIMNKEEID RFFSSVYSDT STTAKRRRRY LYCARR
001: MDLELLQDLS KFNFPTPIKI RSKTSKTKKD EGDDDEDDLR CSTPTSQEHK IPAVVDSPPP PPRKPRPPPS APSATAALMI RSCKRKLLVS TCEIIMNREE
101: IDRFFSSVYN ETSTTAKRRR SYPYCSRR
101: IDRFFSSVYN ETSTTAKRRR SYPYCSRR
Arabidopsis Description
SMR1SMR1 [Source:UniProtKB/TrEMBL;Acc:A0A178V8H0]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.