Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
- cytosol 1
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra028788.1-P | Field mustard | nucleus | 100.0 | 100.0 |
| CDY14155 | Canola | nucleus | 97.67 | 97.67 |
| CDY58442 | Canola | nucleus | 80.62 | 78.2 |
| CDX70222 | Canola | nucleus | 79.84 | 77.44 |
| CDY11293 | Canola | nucleus | 79.84 | 77.44 |
| CDY44858 | Canola | nucleus | 79.84 | 77.44 |
| AT5G04470.1 | Thale cress | cytosol | 75.19 | 76.38 |
| CDY08597 | Canola | cytosol | 55.04 | 55.04 |
| CDY41357 | Canola | cytosol | 51.94 | 53.17 |
| CDX73919 | Canola | nucleus | 49.61 | 52.03 |
| CDY00678 | Canola | nucleus | 49.61 | 50.0 |
| CDY00950 | Canola | plastid | 53.49 | 39.2 |
Protein Annotations
| EnsemblPlants:CDY04913 | EnsemblPlantsGene:GSBRNA2T00119635001 | PANTHER:PTHR33142 | PANTHER:PTHR33142:SF13 | ProteinID:CDY04913 | ProteinID:CDY04913.1 |
| SEG:seg | UniParc:UPI00025430A4 | MapMan:35.2 | : | : | : |
Description
BnaAnng00950D
Coordinates
chrLK031958:-:678468..678857
Molecular Weight (calculated)
14297.1 Da
IEP (calculated)
11.099
GRAVY (calculated)
-0.721
Length
129 amino acids
Sequence
(BLAST)
(BLAST)
001: MDLDLLQDLP MLNFPSPIKI RSNNRDADGG GGGCTTPTSS DHKIPPSSAT TPPPPPQKRR ALPPSLVYRS CKRKLLTSSK FEIIANKDEI DRFFSSVYNQ
101: TMTSSPTTAT TSTLPVARRR RSFRSCSRR
101: TMTSSPTTAT TSTLPVARRR RSFRSCSRR
001: MDLDLIQDLP ILNFPPAIKI RANTNRDDDG GGCTTPTSSD HKIPPTTATT PPPPPQKPRP PSTPSSLGIR SCKRKLMTSL SKYEIIVNKD EIERFFSSVY
101: NQTMASSTTT AITVAKRRRS FRSCSRR
101: NQTMASSTTT AITVAKRRRS FRSCSRR
Arabidopsis Description
SIMCyclin-dependent protein kinase inhibitor SIM [Source:UniProtKB/Swiss-Prot;Acc:Q9LZ78]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.