Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- extracellular 1
- golgi 1
- plasma membrane 1
- endoplasmic reticulum 1
- vacuole 1
- cytosol 1
- mitochondrion 1
- plastid 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX70222 | Canola | nucleus | 97.74 | 97.74 |
| CDY04913 | Canola | nucleus | 77.44 | 79.84 |
| CDY14155 | Canola | nucleus | 76.69 | 79.07 |
| CDY11293 | Canola | nucleus | 77.44 | 77.44 |
| CDY58442 | Canola | nucleus | 77.44 | 77.44 |
| AT5G04470.1 | Thale cress | cytosol | 73.68 | 77.17 |
| CDY41357 | Canola | cytosol | 48.12 | 50.79 |
| CDX73919 | Canola | nucleus | 46.62 | 50.41 |
| CDY08597 | Canola | cytosol | 48.12 | 49.61 |
| CDY00678 | Canola | nucleus | 46.62 | 48.44 |
| CDY00950 | Canola | plastid | 48.12 | 36.36 |
Protein Annotations
| EnsemblPlants:CDY44858 | EnsemblPlantsGene:GSBRNA2T00080910001 | PANTHER:PTHR33142 | PANTHER:PTHR33142:SF13 | ProteinID:CDY44858 | ProteinID:CDY44858.1 |
| SEG:seg | UniParc:UPI0004EACC77 | UniProt:A0A078I6U9 | MapMan:35.1 | : | : |
Description
BnaC09g50580DBnaC09g50580D protein [Source:UniProtKB/TrEMBL;Acc:A0A078I6U9]
Coordinates
chrLK032604:-:87125..87526
Molecular Weight (calculated)
14747.7 Da
IEP (calculated)
11.213
GRAVY (calculated)
-0.702
Length
133 amino acids
Sequence
(BLAST)
(BLAST)
001: MDVGLIQDLP MLNFPSPIKI RSNIDDDGNS GGCTTPTSSH HKIPPLTATT PPPPPQKRRP PPTPSSLVRS CKRKLMTSSK FEIIVNKDEI DRFFSSVYNQ
101: TVTSSPRTTT TTTTTTALTV SKRRRSFRSC SRK
101: TVTSSPRTTT TTTTTTALTV SKRRRSFRSC SRK
001: MDLDLIQDLP ILNFPPAIKI RANTNRDDDG GGCTTPTSSD HKIPPTTATT PPPPPQKPRP PSTPSSLGIR SCKRKLMTSL SKYEIIVNKD EIERFFSSVY
101: NQTMASSTTT AITVAKRRRS FRSCSRR
101: NQTMASSTTT AITVAKRRRS FRSCSRR
Arabidopsis Description
SIMCyclin-dependent protein kinase inhibitor SIM [Source:UniProtKB/Swiss-Prot;Acc:Q9LZ78]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.