Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- nucleus 1
- endoplasmic reticulum 2
- extracellular 1
- vacuole 1
- plasma membrane 3
- golgi 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY09637 | Canola | endoplasmic reticulum, nucleus, plasma membrane | 81.78 | 81.78 |
| CDX90482 | Canola | plasma membrane | 81.92 | 81.7 |
| Bra012672.1-P | Field mustard | endoplasmic reticulum, nucleus, plasma membrane | 81.65 | 81.54 |
| AT5G47580.1 | Thale cress | plasma membrane | 68.56 | 67.91 |
| PGSC0003DMT400012241 | Potato | cytosol, extracellular, plasma membrane | 26.99 | 50.0 |
| PGSC0003DMT400012245 | Potato | plasma membrane | 30.5 | 47.68 |
| VIT_02s0154g00410.t01 | Wine grape | plasma membrane | 48.45 | 47.61 |
| KRH04114 | Soybean | plasma membrane | 47.77 | 46.58 |
| KRH57388 | Soybean | plasma membrane | 47.37 | 46.25 |
| Solyc08g078770.1.1 | Tomato | nucleus | 46.42 | 45.81 |
| PGSC0003DMT400012244 | Potato | plasma membrane | 45.75 | 45.14 |
| GSMUA_Achr4P04960_001 | Banana | plasma membrane | 38.73 | 40.2 |
| PGSC0003DMT400012242 | Potato | cytosol | 16.46 | 38.24 |
| Solyc08g078780.2.1 | Tomato | plasma membrane | 45.34 | 37.5 |
Protein Annotations
| MapMan:35.2 | EntrezGene:827439 | ProteinID:AEE83869.1 | ArrayExpress:AT4G17250 | EnsemblPlantsGene:AT4G17250 | RefSeq:AT4G17250 |
| TAIR:AT4G17250 | RefSeq:AT4G17250-TAIR-G | EnsemblPlants:AT4G17250.1 | TAIR:AT4G17250.1 | EMBL:AY057681 | EMBL:AY143931 |
| GO:GO:0003674 | GO:GO:0005575 | GO:GO:0006950 | GO:GO:0008150 | GO:GO:0009628 | GO:GO:0010286 |
| GO:GO:0016020 | GO:GO:0016021 | RefSeq:NP_567526.4 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000293 |
| PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 |
| PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009047 |
| PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PANTHER:PTHR35307 |
| UniProt:Q93ZA8 | TMHMM:TMhelix | UniParc:UPI00000ABFEF | SEG:seg | : | : |
Description
At4g17250/dl4660w [Source:UniProtKB/TrEMBL;Acc:Q93ZA8]
Coordinates
chr4:+:9670763..9673475
Molecular Weight (calculated)
83946.7 Da
IEP (calculated)
8.687
GRAVY (calculated)
0.028
Length
741 amino acids
Sequence
(BLAST)
(BLAST)
001: MGCDSHGNLS DTEFSKPLPS IGVYVAAASL ICGVAMFSDL LHGFRHRKFW FPCKFFSLNA TTLTFISVCV KLSLDLNTSM PSRQDQLAKL SSSVFVCTVM
101: ANSMPSLGYM VTQDLLMNLT ALGILVITDV VNICIQLGTG AIYVFPQEHA LVIILMLLMF MILSFSAITV PATKRFLELK YKKRYEFALK QCPSYTERRR
201: GVPKLKEDLM KFWMMAHTSS PQFVMARSVT CTTTGFLCFL IAITLAEAMV RSYFLQPRSL GFCNGDSDYK WSTTLVLVSQ TAAVAIGTVA PASRWLKAVN
301: FRCPFRNKKS LKDELRVESY WVECLAEKKE RPLNFWMLHG RCSRKLAHDL NRLMLDICIA TQYGIVLASK FLRFITVYCS SRILLCCFHF TFKSDSVANA
401: ESSGSNPSTR QFVLHLEGEE EMVDYMARSN RVATDHLIQK GRKKQPVNLI ELLEATTFIS KGFEGIRDFD SDEVSSLASG EPPNSWALPL VTLTSIAVAL
501: PNIKPCSLKK LVKAVNEALV YVNKFEEVLD IEGELANSRK AAEVVWLGVD LYHKWLNVDL RKLSKQHSKT PQEVLKELVD IAQKEFTESW EKNRILCMKH
601: KPSHWPIKTQ AANSMYRISQ TLLMKYESRN IETEETLLKD VEKMVSDIVS GCFCNTAQVI GMKCLVTAVE VREASVREAA MHLGRTEKIL EIVDRRCMPA
701: LSHHKVAKID EWREFYRTNK SITFTHPSSQ CTTRELIINL E
101: ANSMPSLGYM VTQDLLMNLT ALGILVITDV VNICIQLGTG AIYVFPQEHA LVIILMLLMF MILSFSAITV PATKRFLELK YKKRYEFALK QCPSYTERRR
201: GVPKLKEDLM KFWMMAHTSS PQFVMARSVT CTTTGFLCFL IAITLAEAMV RSYFLQPRSL GFCNGDSDYK WSTTLVLVSQ TAAVAIGTVA PASRWLKAVN
301: FRCPFRNKKS LKDELRVESY WVECLAEKKE RPLNFWMLHG RCSRKLAHDL NRLMLDICIA TQYGIVLASK FLRFITVYCS SRILLCCFHF TFKSDSVANA
401: ESSGSNPSTR QFVLHLEGEE EMVDYMARSN RVATDHLIQK GRKKQPVNLI ELLEATTFIS KGFEGIRDFD SDEVSSLASG EPPNSWALPL VTLTSIAVAL
501: PNIKPCSLKK LVKAVNEALV YVNKFEEVLD IEGELANSRK AAEVVWLGVD LYHKWLNVDL RKLSKQHSKT PQEVLKELVD IAQKEFTESW EKNRILCMKH
601: KPSHWPIKTQ AANSMYRISQ TLLMKYESRN IETEETLLKD VEKMVSDIVS GCFCNTAQVI GMKCLVTAVE VREASVREAA MHLGRTEKIL EIVDRRCMPA
701: LSHHKVAKID EWREFYRTNK SITFTHPSSQ CTTRELIINL E
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.