Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane, extracellular, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- extracellular 2
- plasma membrane 3
- endoplasmic reticulum 1
- vacuole 1
- golgi 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400012245 | Potato | plasma membrane | 75.5 | 63.71 |
| CDY58173 | Canola | plasma membrane | 48.25 | 47.89 |
| PGSC0003DMT400012244 | Potato | plasma membrane | 88.75 | 47.27 |
| PGSC0003DMT400086734 | Potato | plasma membrane | 34.0 | 41.21 |
| VIT_02s0154g00410.t01 | Wine grape | plasma membrane | 55.0 | 29.18 |
| Bra009567.1-P | Field mustard | plasma membrane | 48.75 | 27.9 |
| KRH04114 | Soybean | plasma membrane | 52.25 | 27.5 |
| KRH57388 | Soybean | plasma membrane | 51.25 | 27.01 |
| AT5G47580.1 | Thale cress | plasma membrane | 50.5 | 27.01 |
| AT4G17250.1 | Thale cress | plasma membrane | 50.0 | 26.99 |
| Bra012672.1-P | Field mustard | endoplasmic reticulum, nucleus, plasma membrane | 49.25 | 26.55 |
| CDY10425 | Canola | plasma membrane | 50.0 | 26.53 |
| CDX90482 | Canola | plasma membrane | 49.25 | 26.51 |
| CDY09637 | Canola | endoplasmic reticulum, nucleus, plasma membrane | 48.25 | 26.05 |
| GSMUA_Achr4P04960_001 | Banana | plasma membrane | 44.75 | 25.07 |
| CDX70346 | Canola | plasma membrane | 44.5 | 24.52 |
| PGSC0003DMT400035852 | Potato | plasma membrane | 35.75 | 20.91 |
| CDY50133 | Canola | cytosol | 3.25 | 3.64 |
| CDX73467 | Canola | extracellular | 4.75 | 2.52 |
| PGSC0003DMT400012242 | Potato | cytosol | 1.0 | 1.25 |
| CDY58172 | Canola | mitochondrion | 0.0 | 0.0 |
| Bra021060.1-P | Field mustard | mitochondrion | 0.0 | 0.0 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400012241 | EnsemblPlantsGene:PGSC0003DMG401004803 | EntrezGene:107062133 | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 |
| PANTHER:PTHR35307 | PFscan:PS51257 | PGSC:PGSC0003DMG401004803 | RefSeq:XP_015167897.1 | SEG:seg | TMHMM:TMhelix |
| UniParc:UPI0002966684 | UniProt:M1A0Z0 | MapMan:35.2 | : | : | : |
Description
Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG401004803]
Coordinates
chr8:+:52439694..52440896
Molecular Weight (calculated)
44695.5 Da
IEP (calculated)
9.035
GRAVY (calculated)
0.357
Length
400 amino acids
Sequence
(BLAST)
(BLAST)
001: MGKIGCTIDG NLDDSKFSEP MPWIGIYVAA ASAACALAMA IDVLHGLRRR KLWFPCNFFS LSATTLTLLA VATKLSVDLN TSMPRRQDQL TKLSSAALLC
101: TATANFLPSL GQMENKELLM NIVALGIFVI TAIVNIGIQL ATGVIYVFCK EHIALVLILL LLLISSALTI PTTKCYLDLK YNNRYKLANK ECNISYTCKT
201: QKLKDELMIL WTMAYTSSPH FVAGRLATCT ASGGFCLLST VIYAQAMLKS YFLHSSLSFC SGDSEYKWSI TLILVTHTVA IGVGTIAPAF RWFIAINFRC
301: PKKTNNACKL TLFKVENYWI HILLKWKECP LDFRICGRHG RKFAHKTKNK LLDFCIWMQI LMVSLSKVVR GHFHFLCELV TDKLSESNQD AEMQKCGVES
101: TATANFLPSL GQMENKELLM NIVALGIFVI TAIVNIGIQL ATGVIYVFCK EHIALVLILL LLLISSALTI PTTKCYLDLK YNNRYKLANK ECNISYTCKT
201: QKLKDELMIL WTMAYTSSPH FVAGRLATCT ASGGFCLLST VIYAQAMLKS YFLHSSLSFC SGDSEYKWSI TLILVTHTVA IGVGTIAPAF RWFIAINFRC
301: PKKTNNACKL TLFKVENYWI HILLKWKECP LDFRICGRHG RKFAHKTKNK LLDFCIWMQI LMVSLSKVVR GHFHFLCELV TDKLSESNQD AEMQKCGVES
001: MGCDSHGNLS DTEFSKPLPS IGVYVAAASL ICGVAMFSDL LHGFRHRKFW FPCKFFSLNA TTLTFISVCV KLSLDLNTSM PSRQDQLAKL SSSVFVCTVM
101: ANSMPSLGYM VTQDLLMNLT ALGILVITDV VNICIQLGTG AIYVFPQEHA LVIILMLLMF MILSFSAITV PATKRFLELK YKKRYEFALK QCPSYTERRR
201: GVPKLKEDLM KFWMMAHTSS PQFVMARSVT CTTTGFLCFL IAITLAEAMV RSYFLQPRSL GFCNGDSDYK WSTTLVLVSQ TAAVAIGTVA PASRWLKAVN
301: FRCPFRNKKS LKDELRVESY WVECLAEKKE RPLNFWMLHG RCSRKLAHDL NRLMLDICIA TQYGIVLASK FLRFITVYCS SRILLCCFHF TFKSDSVANA
401: ESSGSNPSTR QFVLHLEGEE EMVDYMARSN RVATDHLIQK GRKKQPVNLI ELLEATTFIS KGFEGIRDFD SDEVSSLASG EPPNSWALPL VTLTSIAVAL
501: PNIKPCSLKK LVKAVNEALV YVNKFEEVLD IEGELANSRK AAEVVWLGVD LYHKWLNVDL RKLSKQHSKT PQEVLKELVD IAQKEFTESW EKNRILCMKH
601: KPSHWPIKTQ AANSMYRISQ TLLMKYESRN IETEETLLKD VEKMVSDIVS GCFCNTAQVI GMKCLVTAVE VREASVREAA MHLGRTEKIL EIVDRRCMPA
701: LSHHKVAKID EWREFYRTNK SITFTHPSSQ CTTRELIINL E
101: ANSMPSLGYM VTQDLLMNLT ALGILVITDV VNICIQLGTG AIYVFPQEHA LVIILMLLMF MILSFSAITV PATKRFLELK YKKRYEFALK QCPSYTERRR
201: GVPKLKEDLM KFWMMAHTSS PQFVMARSVT CTTTGFLCFL IAITLAEAMV RSYFLQPRSL GFCNGDSDYK WSTTLVLVSQ TAAVAIGTVA PASRWLKAVN
301: FRCPFRNKKS LKDELRVESY WVECLAEKKE RPLNFWMLHG RCSRKLAHDL NRLMLDICIA TQYGIVLASK FLRFITVYCS SRILLCCFHF TFKSDSVANA
401: ESSGSNPSTR QFVLHLEGEE EMVDYMARSN RVATDHLIQK GRKKQPVNLI ELLEATTFIS KGFEGIRDFD SDEVSSLASG EPPNSWALPL VTLTSIAVAL
501: PNIKPCSLKK LVKAVNEALV YVNKFEEVLD IEGELANSRK AAEVVWLGVD LYHKWLNVDL RKLSKQHSKT PQEVLKELVD IAQKEFTESW EKNRILCMKH
601: KPSHWPIKTQ AANSMYRISQ TLLMKYESRN IETEETLLKD VEKMVSDIVS GCFCNTAQVI GMKCLVTAVE VREASVREAA MHLGRTEKIL EIVDRRCMPA
701: LSHHKVAKID EWREFYRTNK SITFTHPSSQ CTTRELIINL E
Arabidopsis Description
At4g17250/dl4660w [Source:UniProtKB/TrEMBL;Acc:Q93ZA8]
SUBAcon: [plasma membrane]
SUBAcon: [plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.