Factsheet for GSMUA_Achr4P04960_001

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 2
cytosol 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 3
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400012241	Potato	cytosol, extracellular, plasma membrane	25.07	44.75
VIT_02s0154g00430.t01	Wine grape	cytosol	6.44	44.66
CDY58173	Canola	plasma membrane	23.25	41.19
PGSC0003DMT400012244	Potato	plasma membrane	42.86	40.75
Bra009567.1-P	Field mustard	plasma membrane	39.64	40.49
VIT_02s0154g00410.t01	Wine grape	plasma membrane	42.3	40.05
PGSC0003DMT400012245	Potato	plasma membrane	26.47	39.87
AT5G47580.1	Thale cress	plasma membrane	41.18	39.3
CDX90482	Canola	plasma membrane	40.48	38.9
Solyc08g078770.1.1	Tomato	nucleus	40.76	38.75
AT4G17250.1	Thale cress	plasma membrane	40.2	38.73
CDY10425	Canola	plasma membrane	40.76	38.59
Bra012672.1-P	Field mustard	endoplasmic reticulum, nucleus, plasma membrane	40.06	38.54
CDY09637	Canola	endoplasmic reticulum, nucleus, plasma membrane	39.92	38.46
CDX70346	Canola	plasma membrane	38.94	38.29
KRH04114	Soybean	plasma membrane	39.5	37.11
KRH57388	Soybean	plasma membrane	39.08	36.76
PGSC0003DMT400086734	Potato	plasma membrane	16.25	35.15
VIT_02s0154g00440.t01	Wine grape	cytosol, plasma membrane, plastid	15.27	34.94
PGSC0003DMT400012242	Potato	cytosol	15.55	34.8
Solyc08g078780.2.1	Tomato	plasma membrane	42.44	33.82
Solyc06g060660.1.1	Tomato	plasma membrane	23.95	33.14
CDY50133	Canola	cytosol	16.39	32.77
Solyc08g078760.1.1	Tomato	plasma membrane	33.75	32.74
PGSC0003DMT400035852	Potato	plasma membrane	30.81	32.16
CDY58172	Canola	mitochondrion	5.74	27.89
Bra021060.1-P	Field mustard	mitochondrion	5.74	27.89
CDX73467	Canola	extracellular	17.79	16.82

Protein Annotations

EnsemblPlants:GSMUA_Achr4P04960_001	EnsemblPlants:GSMUA_Achr4T04960_001	EnsemblPlantsGene:GSMUA_Achr4G04960_001	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
PANTHER:PTHR35307	SEG:seg	TMHMM:TMhelix	UniParc:UPI0002948F76	UniProt:M0SL63	MapMan:35.2

Description

Putative Whole genome shotgun sequence of line PN40024, scaffold_154.assembly12x (Fragment) [Source:GMGC_GENE;Acc:GSMUA_Achr4G04960_001]

Coordinates

chr4:+:3878291..3882422

Molecular Weight (calculated)

79170.8 Da

IEP (calculated)

7.715

GRAVY (calculated)

0.039

Length

714 amino acids

Sequence
(BLAST)

001: MHRHGCAQGG AQSLDASGFS GPLPWVGLYA AAASAACALA MASDAISALR RRQLWFPSFL FSLNATTLTL LSVATKLPLD LSSPMPSLPD QLAKLSGSAL
101: VATATANLLP SLASAPDAAS AAADLIALAI LVITVAANVS IQIATGVIYT FVPEHLAVLI LALALVIILC SSALAVPTTK QLLEEQFDDK FGSASDPDGG
201: NNFDINSLRE SVKRYWLMAH TSSPQYVLGR TATCTASGAF GLLTCLILVE ASMRSVIKDP HGLSFCSGTS DYQWSTTVVF FSQVVAVVVG TIAPAWRWFN
301: AVSFRGPSQR RWSCRDEVRV ERYWIQRLIE WKQDASSTFL VDGSHRSRKM VHELKNVVLV LLTRAQIVVV VICKVVRLAS VRTPSGLEHL SNFVLHLEGE
401: EHLVNLMMRS EREDTERWIR KGTKNQPAHL IHIPSLVTEE PPNCWELPLV TLTTVAVALP YIKPDLVKSL RCAVNEGLRY VRLVDEHLDT KGLHNMRKAG
501: DNLWLGVDLY DKWLDKDLHE LVSEEKSGKK IIEKLGEISR ECVSSFEQKM RDGTEDRRSP LEWPADVFAS NSMYRVSSTI LQEYDGKFGT DDKLFLWLQT
601: IISDIFCACL TNIPRVIYME CICSSVEVRE KRVREAAFLL GEATSILEIL GNPEVTCFYP KSKQYIEDWC MTRQDQNLSL PLKRRTTKTS CQQCQGIQIK
701: KNTRRNSSIA IPPP

Best Arabidopsis Sequence Match ( AT5G47580.1 )
(BLAST)

001: MGILGCDAHG DLNDAEFSKP LPSIGIYVAV ASLICGLAMA ADLIHGFRHR KFWFPCKFFS LNATSLTFIA VGIKLSVDLN TSMPSRQDQL AKLSSTVFVC
101: TVMGNSMPSL GIMDNNDLLM NLMALGILVI TDVVNICIQL GTGAIYVFSE EHFLVVLLML LMLMILCFSA TTVPTTKRIL ESKYNKRYDV AMKCPLATER
201: TVAKKIQQDL SKFWMMAHTS SPQFVMARSV TCTASGFFCL LSAITLGEAM VRSYFLRPRS LGFCHGDSDY KWSTSLVLVC QTTTVAIGTI APAIRWFTAV
301: NFRCPIRGKK YYRDEFRIES YWTHWFSEKK QHPLSLWILK ERRYRKTAHN AKRWILDVCI VIQYVIVFGS KIIRYISVSC VGKILLCCHF ALRTSNTITH
401: SESEKSDSNP SSRQDLASFV LHLEGEDPLV DVMVRSNREA TDHWIEKGRK KQPVNLIELL EATTPISKGF EGIAEFDSNK VASLAHGEPP NCWALPLVTL
501: TSIAVALPDI KPSSLKKLLN AVNEALEYVN KFECVLDTGG ESVNLRKAAE VVWLGVDLYH KWFDVDLRKL SKQQRNPEET LRELMEIAKK EFSESWQMNL
601: MVCMKHKPSH WPIKTLAANS MYRICQTILL TYESRDYGTG EALLRKLEST ISDIVSGCFC NVAQVISVKC LVSAVEVREE SVRGAALHLG RTEKILEILE
701: RRRLPKLRCD QMKNIDEWRA FYKINSCECD NNNKTVYPDS DELRLTVE

Arabidopsis Description

AT5g47580/MNJ7_17 [Source:UniProtKB/TrEMBL;Acc:Q9FGJ9]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.