Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, nucleus, plasma membrane
Predictor Summary:
Predictor Summary:
- nucleus 3
- endoplasmic reticulum 2
- peroxisome 1
- plastid 1
- plasma membrane 3
- extracellular 1
- vacuole 1
- golgi 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX90482 | Canola | plasma membrane | 97.44 | 97.31 |
| AT4G17250.1 | Thale cress | plasma membrane | 81.54 | 81.65 |
| Bra021060.1-P | Field mustard | mitochondrion | 14.69 | 74.15 |
| Bra009567.1-P | Field mustard | plasma membrane | 61.59 | 65.38 |
| PGSC0003DMT400012241 | Potato | cytosol, extracellular, plasma membrane | 26.55 | 49.25 |
| VIT_02s0154g00410.t01 | Wine grape | plasma membrane | 48.92 | 48.14 |
| KRH04114 | Soybean | plasma membrane | 47.71 | 46.58 |
| PGSC0003DMT400012245 | Potato | plasma membrane | 29.38 | 45.99 |
| KRH57388 | Soybean | plasma membrane | 46.9 | 45.85 |
| Solyc08g078770.1.1 | Tomato | nucleus | 46.23 | 45.67 |
| PGSC0003DMT400012244 | Potato | plasma membrane | 45.69 | 45.14 |
| GSMUA_Achr4P04960_001 | Banana | plasma membrane | 38.54 | 40.06 |
| PGSC0003DMT400012242 | Potato | cytosol | 16.85 | 39.19 |
| Solyc08g078780.2.1 | Tomato | plasma membrane | 45.01 | 37.28 |
Protein Annotations
| EnsemblPlants:Bra012672.1 | EnsemblPlants:Bra012672.1-P | EnsemblPlantsGene:Bra012672 | GO:GO:0005575 | GO:GO:0006950 | GO:GO:0008150 |
| GO:GO:0009628 | GO:GO:0010286 | GO:GO:0016020 | GO:GO:0016021 | PANTHER:PTHR35307 | SEG:seg |
| TMHMM:TMhelix | UniParc:UPI0002540993 | UniProt:M4D862 | MapMan:35.2 | : | : |
Description
AT4G17250 (E=0.0) | unknown protein
Coordinates
chrA03:+:22830932..22833160
Molecular Weight (calculated)
83662.2 Da
IEP (calculated)
8.789
GRAVY (calculated)
0.038
Length
742 amino acids
Sequence
(BLAST)
(BLAST)
001: MGCDSHGNLT DAEFSKPLPS IGIYVATASL ICGAAMFADL LHAFRHRKYW FPCKYFSLNA TTLTFISVCV KLSLDLNTPM PSRQDQLAKL SSSVFFCVVM
101: ANSMPSLGFM VTRDLLTNLV ALGILVVTDV VNICIQLGTG AIYVFTREHA LVIVLMLLTF MILSFSAIAI PATKRYLELK YKKKYEFALK ECPSHAERRK
201: GVPKLREDLM KFWMMAHTSS PQFVMARSVT CTASGFLCFL SAVALAEAMV RSYFLQPRSV GFCNGESDYK WSTTLVLVSQ GVAIAFGTIA PASRWFSAVN
301: SRCPSKKGLR GEMRVESYWF ECLSEKRERP LSLWMLQGRR GRKLAHDVNR LMLDVCMATQ RGLVLASKFL RFVTVYFVSR ISLCCLLFTS KCESSTVSNS
401: ESSSSSSTRR FVLHLEGEEE LVDYMARSNR EATEHLIHKG RKQQPVNLIE LLERTTTSIS QGFEGIWDFD SDEVVSLASG EPPNSWALPL VTLTSIAVAL
501: PNIKPCSLKK LVKAVNEALV YVKKFEDVLD IEGELANSRK AAEVVWLGVD LYHKWLDVDL RKLSKQQKST KQVLEEMVGI AKKEFTELWQ KNLIYCMKHK
601: PSHWPIKTLA ANSMYRIGQT LLNKYESRDV GTEEEALLKN VERMVSDIVA GCFCNAAQVI GMKCLVTAVE VREASVREAA MHLGRTEKIL EIVDRRFMPA
701: LSHHEVAKID EWREFYRTNR CSISLTRPSS QCTTRDLILN LE
101: ANSMPSLGFM VTRDLLTNLV ALGILVVTDV VNICIQLGTG AIYVFTREHA LVIVLMLLTF MILSFSAIAI PATKRYLELK YKKKYEFALK ECPSHAERRK
201: GVPKLREDLM KFWMMAHTSS PQFVMARSVT CTASGFLCFL SAVALAEAMV RSYFLQPRSV GFCNGESDYK WSTTLVLVSQ GVAIAFGTIA PASRWFSAVN
301: SRCPSKKGLR GEMRVESYWF ECLSEKRERP LSLWMLQGRR GRKLAHDVNR LMLDVCMATQ RGLVLASKFL RFVTVYFVSR ISLCCLLFTS KCESSTVSNS
401: ESSSSSSTRR FVLHLEGEEE LVDYMARSNR EATEHLIHKG RKQQPVNLIE LLERTTTSIS QGFEGIWDFD SDEVVSLASG EPPNSWALPL VTLTSIAVAL
501: PNIKPCSLKK LVKAVNEALV YVKKFEDVLD IEGELANSRK AAEVVWLGVD LYHKWLDVDL RKLSKQQKST KQVLEEMVGI AKKEFTELWQ KNLIYCMKHK
601: PSHWPIKTLA ANSMYRIGQT LLNKYESRDV GTEEEALLKN VERMVSDIVA GCFCNAAQVI GMKCLVTAVE VREASVREAA MHLGRTEKIL EIVDRRFMPA
701: LSHHEVAKID EWREFYRTNR CSISLTRPSS QCTTRDLILN LE
001: MGCDSHGNLS DTEFSKPLPS IGVYVAAASL ICGVAMFSDL LHGFRHRKFW FPCKFFSLNA TTLTFISVCV KLSLDLNTSM PSRQDQLAKL SSSVFVCTVM
101: ANSMPSLGYM VTQDLLMNLT ALGILVITDV VNICIQLGTG AIYVFPQEHA LVIILMLLMF MILSFSAITV PATKRFLELK YKKRYEFALK QCPSYTERRR
201: GVPKLKEDLM KFWMMAHTSS PQFVMARSVT CTTTGFLCFL IAITLAEAMV RSYFLQPRSL GFCNGDSDYK WSTTLVLVSQ TAAVAIGTVA PASRWLKAVN
301: FRCPFRNKKS LKDELRVESY WVECLAEKKE RPLNFWMLHG RCSRKLAHDL NRLMLDICIA TQYGIVLASK FLRFITVYCS SRILLCCFHF TFKSDSVANA
401: ESSGSNPSTR QFVLHLEGEE EMVDYMARSN RVATDHLIQK GRKKQPVNLI ELLEATTFIS KGFEGIRDFD SDEVSSLASG EPPNSWALPL VTLTSIAVAL
501: PNIKPCSLKK LVKAVNEALV YVNKFEEVLD IEGELANSRK AAEVVWLGVD LYHKWLNVDL RKLSKQHSKT PQEVLKELVD IAQKEFTESW EKNRILCMKH
601: KPSHWPIKTQ AANSMYRISQ TLLMKYESRN IETEETLLKD VEKMVSDIVS GCFCNTAQVI GMKCLVTAVE VREASVREAA MHLGRTEKIL EIVDRRCMPA
701: LSHHKVAKID EWREFYRTNK SITFTHPSSQ CTTRELIINL E
101: ANSMPSLGYM VTQDLLMNLT ALGILVITDV VNICIQLGTG AIYVFPQEHA LVIILMLLMF MILSFSAITV PATKRFLELK YKKRYEFALK QCPSYTERRR
201: GVPKLKEDLM KFWMMAHTSS PQFVMARSVT CTTTGFLCFL IAITLAEAMV RSYFLQPRSL GFCNGDSDYK WSTTLVLVSQ TAAVAIGTVA PASRWLKAVN
301: FRCPFRNKKS LKDELRVESY WVECLAEKKE RPLNFWMLHG RCSRKLAHDL NRLMLDICIA TQYGIVLASK FLRFITVYCS SRILLCCFHF TFKSDSVANA
401: ESSGSNPSTR QFVLHLEGEE EMVDYMARSN RVATDHLIQK GRKKQPVNLI ELLEATTFIS KGFEGIRDFD SDEVSSLASG EPPNSWALPL VTLTSIAVAL
501: PNIKPCSLKK LVKAVNEALV YVNKFEEVLD IEGELANSRK AAEVVWLGVD LYHKWLNVDL RKLSKQHSKT PQEVLKELVD IAQKEFTESW EKNRILCMKH
601: KPSHWPIKTQ AANSMYRISQ TLLMKYESRN IETEETLLKD VEKMVSDIVS GCFCNTAQVI GMKCLVTAVE VREASVREAA MHLGRTEKIL EIVDRRCMPA
701: LSHHKVAKID EWREFYRTNK SITFTHPSSQ CTTRELIINL E
Arabidopsis Description
At4g17250/dl4660w [Source:UniProtKB/TrEMBL;Acc:Q93ZA8]
SUBAcon: [plasma membrane]
SUBAcon: [plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.