CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 6
endoplasmic reticulum 5
vacuole 5
plasma membrane 5
golgi 5

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	secretory
BaCelLo:	secretory
iPSORT:	secretory
MultiLoc:	extracellular
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY50133	Canola	cytosol	25.17	53.22
CDY58172	Canola	mitochondrion	10.33	53.06
CDY10425	Canola	plasma membrane	42.78	42.84
CDX70346	Canola	plasma membrane	40.26	41.87
PGSC0003DMT400012242	Potato	cytosol	16.69	39.5
AT5G47580.1	Thale cress	plasma membrane	35.76	36.1
CDY09637	Canola	endoplasmic reticulum, nucleus, plasma membrane	29.27	29.82
CDX90482	Canola	plasma membrane	28.74	29.21
KRH04114	Soybean	plasma membrane	20.66	20.53
KRH57388	Soybean	plasma membrane	20.26	20.16
VIT_02s0154g00410.t01	Wine grape	plasma membrane	19.87	19.89
Solyc08g078770.1.1	Tomato	nucleus	19.47	19.57
PGSC0003DMT400012244	Potato	plasma membrane	18.94	19.04
GSMUA_Achr4P04960_001	Banana	plasma membrane	16.82	17.79
Solyc08g078780.2.1	Tomato	plasma membrane	18.94	15.96
PGSC0003DMT400012245	Potato	plasma membrane	3.58	5.7
PGSC0003DMT400012241	Potato	cytosol, extracellular, plasma membrane	2.52	4.75
CDY58173	Canola	plasma membrane	2.25	4.22

Protein Annotations

EnsemblPlants:CDX73467	EnsemblPlantsGene:GSBRNA2T00108976001	GO:A0A078C9C7	GO:GO:0003674	GO:GO:0005198	GO:GO:0005199
GO:GO:0008150	GO:GO:0009664	GO:GO:0009987	GO:GO:0016043	InterPro:Extensin_dom	PANTHER:PTHR35307
PFAM:PF04554	PRINTS:PR01217	ProteinID:CDX73467	ProteinID:CDX73467.1	SEG:seg	SignalP:SignalP-noTM
TMHMM:TMhelix	UniParc:UPI0004EE1141	MapMan:21.4.1.3.1	:	:	:

Description

BnaC08g25360D

Coordinates

chrLK031799:+:578557..580946

Molecular Weight (calculated)

55708.4 Da

IEP (calculated)

7.324

GRAVY (calculated)

-0.306

Length

755 amino acids

Sequence
(BLAST)

001: MGPSAHITYA LGVIIMATMV AAYEPYSLPP LPSYSPSPKV EYNTPPLPYI SNSPPPPTYY SPSPKVDYKS PPPPYVYSSP PPPPYYSPSP KVEYKSPPPP
101: YVYSSPPPPP YYSPSPKVDY KSPPPPYVYS SPPPPPYYSP SPKVEYKSPP PPYVYSSPPP PPYYSPSPKV EYKSPPPPYV YIQVSSXXXX XXXXXXXXXX
201: XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX
301: XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX
401: XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXTNGEAADH GEKRGRKTQP VNLIELLEAT TKISKGFEGI REFDSSEVAS LAPSGEPPNC
501: WALPLVTMTT IALSLPNVKP CSVKRLLNAV NEALDSVNKF ECVLDTGGEL ANLRKAAEVV WLGVDLYHKW FDVDLRKLSK QEKTPEETLR ELAEVANREF
601: SESWQMNLMV CMKHKPSHWP IKTLAANSMY RICQTILLNY ETRDYGTGEA LLRKLETTIS DIVSGCFCNV VQVVSVKCLV TAVEVREESV RGAALHLGRT
701: EKILEIVERR RLPELRCDQL KNIDEWRAFY KMNSSDCSSR KTVSSESNEV CITVD

Best Arabidopsis Sequence Match ( AT3G28550.2 )
(BLAST)

001: MISSSKMGPS AHLVYAIGVI IMATMVAAYE PYTDSSPPPY SVPLPKVEYK SPPLPDVYSS PPPPLEYSPA PKVDYKSPPP PYYSPSPKVE YKSPPPPYVY
101: NSPPPPYYSP SPKVDYKSPP PPYVYSSPPP PIYSPSPKVD YKSPPPPYVY SSPPPPYYSP SPKVEYKSPP SPYVYNSPPP SYYSPSPKVD YKSPPPPYVY
201: SSPPPPYYSP SPKVDYKSPP PPYVYSSPPP PYYSPSPKVV YKSPPPPYVY SSPPPPYYSP TPKVDYKSPP PPYVYSSPPP PYYSPSPKVD YKSPPPPYVY
301: SSPPPPYYSP SPKIVYKSPP PPYVYSSPPP PYYTPSPKVV YKSPPPPYVY SSPPPPYYSP SPKVDYKSPP PPYVYSSPPP PYYSPSPKVV YKSPPPPYVY
401: SSPPPPYYSP SPKVDYKSPP PPYVYSSPPP PYYSPSPKVL YKSPPPPYVY SSPPPPYYSP SPKVVYKSPP PPYVYSSPPP PYYSPSPKVV YKSPPPPYVY
501: SSPPPPYYSP SPKVDYKSPP PPYVYSSPPP PYYSPSPKVD YKSPPPPYVY SSPPPPYYSP SPKVDYKSPP PPYVYSSPPP PYYSPAPKVD YKSPPPPYVY
601: SSPPPPYYSP SPKVDYKSPP PPYYSPSPKV DYKSPPPPYV YSSPPPPSYS PSPKTEY

Arabidopsis Description

Proline-rich extensin-like family protein [Source:UniProtKB/TrEMBL;Acc:F4J0B5]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.