Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- plastid 1
- extracellular 3
- endoplasmic reticulum 4
- vacuole 3
- plasma membrane 5
- golgi 3
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400035852 | Potato | plasma membrane | 89.92 | 67.84 |
| VIT_02s0154g00440.t01 | Wine grape | cytosol, plasma membrane, plastid | 22.48 | 37.18 |
| Solyc08g078760.1.1 | Tomato | plasma membrane | 36.82 | 25.82 |
| Solyc08g078770.1.1 | Tomato | nucleus | 36.24 | 24.9 |
| GSMUA_Achr4P04960_001 | Banana | plasma membrane | 33.14 | 23.95 |
| Solyc08g078780.2.1 | Tomato | plasma membrane | 37.79 | 21.76 |
| VIT_02s0154g00430.t01 | Wine grape | cytosol | 4.26 | 21.36 |
Protein Annotations
| EnsemblPlants:Solyc06g060660.1.1 | EnsemblPlantsGene:Solyc06g060660.1 | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 | PANTHER:PTHR35307 |
| SEG:seg | TMHMM:TMhelix | UniParc:UPI000276637E | UniProt:K4C6P6 | MapMan:35.2 | : |
Description
No Description!
Coordinates
chr6:-:38679444..38680994
Molecular Weight (calculated)
58359.6 Da
IEP (calculated)
8.690
GRAVY (calculated)
0.246
Length
516 amino acids
Sequence
(BLAST)
(BLAST)
001: MSHHDNFSAP MPWIGRYIVA ASLICILAML ADAEQGIRRR KFWIPCRFFT FNAASLTLLG VVVKLPLDLN NPMPGKIDQM AKLSSVVFMS TAMANFMPSL
101: ALMDNKDILM GMTALGILVI TLVVNVCIEL GTGIIYSEKT EHIVVMLSMV VLFVIMCFSA LTVPTIKSYL ELEYRERSNM IEIDNLVEGE KPVEVKLKEN
201: LSKFFVMAKT GNPQFVMARS ATCAACCAIC CLNCLLLLEV SFRDNLFDAH VLSMSDYRRS TYCIARIQSA GVAVGTLSSL IRWFAIATIK SSRKSICIKV
301: EKHWLERLKD WKDSPFAPEI KNPKCRKLVQ QIHIIILLNC IRVQILIVVA SKIVQIFPIL LLSFLRFCFY SSSQCNNIIN SESESAESLE EDISRYVLHL
401: EGEEELTQVT ANKRDDTTCM MEIGRKQKPE HLIKLLQKLT DFRGVSKFDI NQFQELHIGW KMCIVTLTTI ATTIPNIDHK MADSLLLSVK VSSMSASLNM
501: SLEPKKTRRK INKQQR
101: ALMDNKDILM GMTALGILVI TLVVNVCIEL GTGIIYSEKT EHIVVMLSMV VLFVIMCFSA LTVPTIKSYL ELEYRERSNM IEIDNLVEGE KPVEVKLKEN
201: LSKFFVMAKT GNPQFVMARS ATCAACCAIC CLNCLLLLEV SFRDNLFDAH VLSMSDYRRS TYCIARIQSA GVAVGTLSSL IRWFAIATIK SSRKSICIKV
301: EKHWLERLKD WKDSPFAPEI KNPKCRKLVQ QIHIIILLNC IRVQILIVVA SKIVQIFPIL LLSFLRFCFY SSSQCNNIIN SESESAESLE EDISRYVLHL
401: EGEEELTQVT ANKRDDTTCM MEIGRKQKPE HLIKLLQKLT DFRGVSKFDI NQFQELHIGW KMCIVTLTTI ATTIPNIDHK MADSLLLSVK VSSMSASLNM
501: SLEPKKTRRK INKQQR
001: MGCDSHGNLS DTEFSKPLPS IGVYVAAASL ICGVAMFSDL LHGFRHRKFW FPCKFFSLNA TTLTFISVCV KLSLDLNTSM PSRQDQLAKL SSSVFVCTVM
101: ANSMPSLGYM VTQDLLMNLT ALGILVITDV VNICIQLGTG AIYVFPQEHA LVIILMLLMF MILSFSAITV PATKRFLELK YKKRYEFALK QCPSYTERRR
201: GVPKLKEDLM KFWMMAHTSS PQFVMARSVT CTTTGFLCFL IAITLAEAMV RSYFLQPRSL GFCNGDSDYK WSTTLVLVSQ TAAVAIGTVA PASRWLKAVN
301: FRCPFRNKKS LKDELRVESY WVECLAEKKE RPLNFWMLHG RCSRKLAHDL NRLMLDICIA TQYGIVLASK FLRFITVYCS SRILLCCFHF TFKSDSVANA
401: ESSGSNPSTR QFVLHLEGEE EMVDYMARSN RVATDHLIQK GRKKQPVNLI ELLEATTFIS KGFEGIRDFD SDEVSSLASG EPPNSWALPL VTLTSIAVAL
501: PNIKPCSLKK LVKAVNEALV YVNKFEEVLD IEGELANSRK AAEVVWLGVD LYHKWLNVDL RKLSKQHSKT PQEVLKELVD IAQKEFTESW EKNRILCMKH
601: KPSHWPIKTQ AANSMYRISQ TLLMNSGSEG SVGERSGNAF GENREDT
101: ANSMPSLGYM VTQDLLMNLT ALGILVITDV VNICIQLGTG AIYVFPQEHA LVIILMLLMF MILSFSAITV PATKRFLELK YKKRYEFALK QCPSYTERRR
201: GVPKLKEDLM KFWMMAHTSS PQFVMARSVT CTTTGFLCFL IAITLAEAMV RSYFLQPRSL GFCNGDSDYK WSTTLVLVSQ TAAVAIGTVA PASRWLKAVN
301: FRCPFRNKKS LKDELRVESY WVECLAEKKE RPLNFWMLHG RCSRKLAHDL NRLMLDICIA TQYGIVLASK FLRFITVYCS SRILLCCFHF TFKSDSVANA
401: ESSGSNPSTR QFVLHLEGEE EMVDYMARSN RVATDHLIQK GRKKQPVNLI ELLEATTFIS KGFEGIRDFD SDEVSSLASG EPPNSWALPL VTLTSIAVAL
501: PNIKPCSLKK LVKAVNEALV YVNKFEEVLD IEGELANSRK AAEVVWLGVD LYHKWLNVDL RKLSKQHSKT PQEVLKELVD IAQKEFTESW EKNRILCMKH
601: KPSHWPIKTQ AANSMYRISQ TLLMNSGSEG SVGERSGNAF GENREDT
Arabidopsis Description
At4g17250/dl4660w [Source:UniProtKB/TrEMBL;Acc:Q93ZA8]
SUBAcon: [endoplasmic reticulum,plasma membrane,peroxisome]
SUBAcon: [endoplasmic reticulum,plasma membrane,peroxisome]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.