Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX88218 | Canola | nucleus | 57.68 | 63.9 |
| Bra009884.1-P | Field mustard | nucleus | 57.89 | 63.84 |
| CDY52626 | Canola | nucleus | 56.97 | 63.33 |
| KRH15624 | Soybean | nucleus | 35.04 | 31.32 |
| Solyc08g062500.2.1 | Tomato | mitochondrion | 33.5 | 31.29 |
| KRH05392 | Soybean | mitochondrion | 34.32 | 30.71 |
| PGSC0003DMT400021201 | Potato | cytosol | 34.73 | 30.62 |
| VIT_04s0008g01460.t01 | Wine grape | nucleus | 37.6 | 30.48 |
| AT5G20610.1 | Thale cress | nucleus | 33.3 | 27.92 |
| AT1G42550.1 | Thale cress | nucleus | 17.83 | 20.64 |
Protein Annotations
| MapMan:20.5.6 | EntrezGene:832685 | EMBL:AC005965 | ProteinID:AED93531.1 | EMBL:AF149413 | EMBL:AK228491 |
| ProteinID:ANM71066.1 | ArrayExpress:AT5G26160 | EnsemblPlantsGene:AT5G26160 | RefSeq:AT5G26160 | TAIR:AT5G26160 | RefSeq:AT5G26160-TAIR-G |
| EnsemblPlants:AT5G26160.2 | Unigene:At.30865 | EMBL:BT008610 | InterPro:IPR019448 | RefSeq:NP_001332622.1 | RefSeq:NP_197988.3 |
| InterPro:NT-C2 | PFAM:PF10358 | PFscan:PS51840 | PANTHER:PTHR33414 | PANTHER:PTHR33414:SF9 | UniProt:Q7Y219 |
| UniParc:UPI000019AB07 | SEG:seg | : | : | : | : |
Description
PMIR2Protein PLASTID MOVEMENT IMPAIRED 1-RELATED 2 [Source:UniProtKB/Swiss-Prot;Acc:Q7Y219]
Coordinates
chr5:+:9142865..9146525
Molecular Weight (calculated)
107945.0 Da
IEP (calculated)
4.561
GRAVY (calculated)
-0.384
Length
976 amino acids
Sequence
(BLAST)
(BLAST)
001: MSVNDREDSS ADLYNGQLLR DIKEVSKALY LTNGPQRPVL SLSPPVRSQS VSRTTEIGLV LSNKKKKSLV PWNWKKPLNA IAHFGQRRFD VCFLLHVHSI
101: EGLPLNLDGT KLVVQWKRKD EVMTTQPSKV LQGTAEFEET LTHRCSVYGS KHGPHRSAKY QVKLFLIYVS PVDAPWLVLG KHWIDLTRIL PLSLEEMEGT
201: RSTRKWNTSF KLSGLAESAV LNLSFDYSVV TSSVCDSTSK NVMLRRVGSV PSMDHRSPPL DDGKVVNEVS PSLSLNLSQS IDFLYEKLGE QNPQRSTGTE
301: VELGLETDKQ AADSDDSGKG VETFQQERSG LEESNDPNTE SSRIEIIDVH EILKDEDESV FEETYFIDQL SVAALKSEPS NLLPKHSVDG TPKSTFSSQV
401: ISESSESKSP SAMDDSTEKE NFLEVKSSYK AAKISMTSLS LDDITESVAN DFLNMLELEE CSYVYTSDGE PTSPRESLLR EFEKEAFASG NFLLDLNGEA
501: EYVSDIDEKS NDFSFSASSL DVGENKREGK SQLLIDRRKA KVLEDLETET LLRECDFDDN SFDNSLCVCS DGFGSPIELP VDKGLDLLPL GDNIGPSVWT
601: KGGGCIRSMN HLLFRESKEA SQLIMQVSVP VVLVSELGSD ILEILQIFAA SGIEGLCSEV NALIPLEDIM GKTIHEVVDV TKFKRTGQDC SDKSKGVVVQ
701: KPPGQLHLCS SNEEFGSSMC PSNVPLEDVT SLAIDEIYIL SIEGLKIQCS MSDQDPPSGI APKPMDQSDA LELIRFSLTL DEWLRLDQGM LENKDQDLAS
801: NGKGHTLRNK LTLALQVLLR DPSLNNEPIG ASMLALIQVE RSLDSPNSSL CSLAQEGRNK ESFGYDTQLW RITEIGLAGL KIEPGADHPW CTKSQQQSGS
901: RWLLANGTDK TIKCQASESK VIIVSNVQAT RKRLDTLWSI ISDRHHQEGD LSNSAASVPF TRNLDVIFSN EVTERS
101: EGLPLNLDGT KLVVQWKRKD EVMTTQPSKV LQGTAEFEET LTHRCSVYGS KHGPHRSAKY QVKLFLIYVS PVDAPWLVLG KHWIDLTRIL PLSLEEMEGT
201: RSTRKWNTSF KLSGLAESAV LNLSFDYSVV TSSVCDSTSK NVMLRRVGSV PSMDHRSPPL DDGKVVNEVS PSLSLNLSQS IDFLYEKLGE QNPQRSTGTE
301: VELGLETDKQ AADSDDSGKG VETFQQERSG LEESNDPNTE SSRIEIIDVH EILKDEDESV FEETYFIDQL SVAALKSEPS NLLPKHSVDG TPKSTFSSQV
401: ISESSESKSP SAMDDSTEKE NFLEVKSSYK AAKISMTSLS LDDITESVAN DFLNMLELEE CSYVYTSDGE PTSPRESLLR EFEKEAFASG NFLLDLNGEA
501: EYVSDIDEKS NDFSFSASSL DVGENKREGK SQLLIDRRKA KVLEDLETET LLRECDFDDN SFDNSLCVCS DGFGSPIELP VDKGLDLLPL GDNIGPSVWT
601: KGGGCIRSMN HLLFRESKEA SQLIMQVSVP VVLVSELGSD ILEILQIFAA SGIEGLCSEV NALIPLEDIM GKTIHEVVDV TKFKRTGQDC SDKSKGVVVQ
701: KPPGQLHLCS SNEEFGSSMC PSNVPLEDVT SLAIDEIYIL SIEGLKIQCS MSDQDPPSGI APKPMDQSDA LELIRFSLTL DEWLRLDQGM LENKDQDLAS
801: NGKGHTLRNK LTLALQVLLR DPSLNNEPIG ASMLALIQVE RSLDSPNSSL CSLAQEGRNK ESFGYDTQLW RITEIGLAGL KIEPGADHPW CTKSQQQSGS
901: RWLLANGTDK TIKCQASESK VIIVSNVQAT RKRLDTLWSI ISDRHHQEGD LSNSAASVPF TRNLDVIFSN EVTERS
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.