Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| VIT_11s0016g01610.t01 | Wine grape | cytosol | 10.96 | 52.38 |
| VIT_11s0016g01690.t01 | Wine grape | cytosol | 47.59 | 48.72 |
| PGSC0003DMT400021201 | Potato | cytosol | 41.11 | 44.72 |
| Solyc08g062500.2.1 | Tomato | mitochondrion | 38.54 | 44.4 |
| KRH05392 | Soybean | mitochondrion | 37.79 | 41.7 |
| KRH15624 | Soybean | nucleus | 37.04 | 40.84 |
| CDX88218 | Canola | nucleus | 29.15 | 39.84 |
| CDY52626 | Canola | nucleus | 28.99 | 39.75 |
| Bra009884.1-P | Field mustard | nucleus | 28.82 | 39.21 |
| AT5G26160.2 | Thale cress | nucleus | 30.48 | 37.6 |
| VIT_18s0122g00830.t01 | Wine grape | nucleus | 18.02 | 25.26 |
Protein Annotations
| EntrezGene:100244060 | wikigene:100244060 | MapMan:20.5.6 | Gene3D:3.10.350.10 | EMBL:AM431949 | ProteinID:CAN73665 |
| ProteinID:CAN73665.1 | ProteinID:CCB46581 | ProteinID:CCB46581.1 | UniProt:F6H3P8 | EMBL:FN595231 | InterPro:IPR018392 |
| InterPro:IPR019448 | InterPro:IPR036779 | EntrezGene:LOC100244060 | wikigene:LOC100244060 | InterPro:LysM_dom | InterPro:LysM_dom_sf |
| InterPro:NT-C2 | PFAM:PF10358 | PFscan:PS51840 | PANTHER:PTHR33414 | PANTHER:PTHR33414:SF9 | UniParc:UPI00021097F3 |
| ArrayExpress:VIT_04s0008g01460 | EnsemblPlantsGene:VIT_04s0008g01460 | EnsemblPlants:VIT_04s0008g01460.t01 | RefSeq:XP_002279384 | RefSeq:XP_002279384.1 | SEG:seg |
Description
No Description!
Coordinates
chr4:+:1204416..1210141
Molecular Weight (calculated)
133995.0 Da
IEP (calculated)
4.833
GRAVY (calculated)
-0.400
Length
1204 amino acids
Sequence
(BLAST)
(BLAST)
0001: MNDSPEYSIR MMLSKIESGK NHGRDSNGGE LLHDIKALSK ALYMDQTPSK ALISSSQARS QSVGKTRLSE SKSKIFEEDF LQKDKKSSTW NWKKSIKALT
0101: HIRDRKFNCC FFLHVHSIEG LPSNFNDYSL CVHWKRKDEV LHTCPSHICQ GVAEFEETIM HRCSVYGHRS GTHNSAKYEA RHFLLYASVV GKPGLDMGKH
0201: WVDLTKLLPV TLDELEEDKS SGKWSTSYKL SGMAKGATLN VSYGFLIMKD NSIESNNVIF PELLNLNQNR TSTGNDMLQQ VGSIPSHGSR CPSLSLDVKI
0301: LNEGFPNPGL ELSRSISFIY KKLDEGKLGN SLGSDIFSED VESFKPKPNL FFESAEEIIG SDCDDAEFDV TEKGIEFSTK ELLKLEDGAA QPYGGSKVET
0401: VHVDEIIKDE ETDCDLKNDF YGKCKDGDVM DDDNFKENSA YTKDSSMEEL EYFLDSLSIS DSAELHSPLA MSDFLEQENY LEVKSKFKAS KAVKKSLSLD
0501: DATESVASEF LKMLGIEDSS FGLSADSDLE SPRECLLRQF EKDNLASGNF IFDSEETEVQ TQFGCDAPTG SDSGNFGTPT GSEFGNCCKD LHFISVIQAA
0601: EEEHKTMGQP LVSRRKAKML EDLETVALMQ EWGLSEKVFQ NSPRYSSGGF GSPIYLPPEE PVRLPPLGEG LGPFIQTKDG GFLRSMHPSV FRNVKNGGSL
0701: IMQASVLVVL PAEMGADIME ILQHLASIGI EKFSMQASKL MPLEDITGKT MHQIACEAAF ALEVPERHTS FVHESEVGQD TFGLGNTAEE FSSWQNNDNL
0801: NSSSVGGEMV SDYVSLEDLA PSAMDKIEVL SIEGLRIHSG MSDEEAPSCI SSKYVEEISD FDGKKTVNLI RTLDFEGAVG LHLLNASDIG SDDNGLMSLS
0901: LTLDEWLRLD SGIICDEDQI SEHTSKILAA HHAKCMDLVN GRLKRDRKWG KASGRKWGML QNNFTVALMV QLRDPFRNYE PVGAPVLALI QVERVFFPPK
1001: PKIYNMESEP SNSGEVVDQH ESVVKGEVDG EIKEKEEDEE LISQFKITQV HVAGVNTEPG RKKLWCSASQ HQSGFRWLLA NGIDKTNKHV LSKSKVIVKA
1101: SSQVRAQVWP GEILWSISCR FNGTRAKWKE LAALNLHIRN PDVIFPSETQ DHIACLEIGF VDGIKSGWFF GLDDSNEICL WSLYLYLHSD VVNHYAMINS
1201: KNSI
0101: HIRDRKFNCC FFLHVHSIEG LPSNFNDYSL CVHWKRKDEV LHTCPSHICQ GVAEFEETIM HRCSVYGHRS GTHNSAKYEA RHFLLYASVV GKPGLDMGKH
0201: WVDLTKLLPV TLDELEEDKS SGKWSTSYKL SGMAKGATLN VSYGFLIMKD NSIESNNVIF PELLNLNQNR TSTGNDMLQQ VGSIPSHGSR CPSLSLDVKI
0301: LNEGFPNPGL ELSRSISFIY KKLDEGKLGN SLGSDIFSED VESFKPKPNL FFESAEEIIG SDCDDAEFDV TEKGIEFSTK ELLKLEDGAA QPYGGSKVET
0401: VHVDEIIKDE ETDCDLKNDF YGKCKDGDVM DDDNFKENSA YTKDSSMEEL EYFLDSLSIS DSAELHSPLA MSDFLEQENY LEVKSKFKAS KAVKKSLSLD
0501: DATESVASEF LKMLGIEDSS FGLSADSDLE SPRECLLRQF EKDNLASGNF IFDSEETEVQ TQFGCDAPTG SDSGNFGTPT GSEFGNCCKD LHFISVIQAA
0601: EEEHKTMGQP LVSRRKAKML EDLETVALMQ EWGLSEKVFQ NSPRYSSGGF GSPIYLPPEE PVRLPPLGEG LGPFIQTKDG GFLRSMHPSV FRNVKNGGSL
0701: IMQASVLVVL PAEMGADIME ILQHLASIGI EKFSMQASKL MPLEDITGKT MHQIACEAAF ALEVPERHTS FVHESEVGQD TFGLGNTAEE FSSWQNNDNL
0801: NSSSVGGEMV SDYVSLEDLA PSAMDKIEVL SIEGLRIHSG MSDEEAPSCI SSKYVEEISD FDGKKTVNLI RTLDFEGAVG LHLLNASDIG SDDNGLMSLS
0901: LTLDEWLRLD SGIICDEDQI SEHTSKILAA HHAKCMDLVN GRLKRDRKWG KASGRKWGML QNNFTVALMV QLRDPFRNYE PVGAPVLALI QVERVFFPPK
1001: PKIYNMESEP SNSGEVVDQH ESVVKGEVDG EIKEKEEDEE LISQFKITQV HVAGVNTEPG RKKLWCSASQ HQSGFRWLLA NGIDKTNKHV LSKSKVIVKA
1101: SSQVRAQVWP GEILWSISCR FNGTRAKWKE LAALNLHIRN PDVIFPSETQ DHIACLEIGF VDGIKSGWFF GLDDSNEICL WSLYLYLHSD VVNHYAMINS
1201: KNSI
001: MSVNDREDSS ADLYNGQLLR DIKEVSKALY LTNGPQRPVL SLSPPVRSQS VSRTTEIGLV LSNKKKKSLV PWNWKKPLNA IAHFGQRRFD VCFLLHVHSI
101: EGLPLNLDGT KLVVQWKRKD EVMTTQPSKV LQGTAEFEET LTHRCSVYGS KHGPHRSAKY QVKLFLIYVS PVDAPWLVLG KHWIDLTRIL PLSLEEMEGT
201: RSTRKWNTSF KLSGLAESAV LNLSFDYSVV TSSVCDSTSK NVMLRRVGSV PSMDHRSPPL DDGKVVNEVS PSLSLNLSQS IDFLYEKLGE QNPQRSTGTE
301: VELGLETDKQ AADSDDSGKG VETFQQERSG LEESNDPNTE SSRIEIIDVH EILKDEDESV FEETYFIDQL SVAALKSEPS NLLPKHSVDG TPKSTFSSQV
401: ISESSESKSP SAMDDSTEKE NFLEVKSSYK AAKISMTSLS LDDITESVAN DFLNMLELEE CSYVYTSDGE PTSPRESLLR EFEKEAFASG NFLLDLNGEA
501: EYVSDIDEKS NDFSFSASSL DVGENKREGK SQLLIDRRKA KVLEDLETET LLRECDFDDN SFDNSLCVCS DGFGSPIELP VDKGLDLLPL GDNIGPSVWT
601: KGGGCIRSMN HLLFRESKEA SQLIMQVSVP VVLVSELGSD ILEILQIFAA SGIEGLCSEV NALIPLEDIM GKTIHEVVDV TKFKRTGQDC SDKSKGVVVQ
701: KPPGQLHLCS SNEEFGSSMC PSNVPLEDVT SLAIDEIYIL SIEGLKIQCS MSDQDPPSGI APKPMDQSDA LELIRFSLTL DEWLRLDQGM LENKDQDLAS
801: NGKGHTLRNK LTLALQVLLR DPSLNNEPIG ASMLALIQVE RSLDSPNSSL CSLAQEGRNK ESFGYDTQLW RITEIGLAGL KIEPGADHPW CTKSQQQSGS
901: RWLLANGTDK TIKCQASESK VIIVSNVQAT RKRLDTLWSI ISDRHHQEGD LSNSAASVPF TRNLDVIFSN EVTERS
101: EGLPLNLDGT KLVVQWKRKD EVMTTQPSKV LQGTAEFEET LTHRCSVYGS KHGPHRSAKY QVKLFLIYVS PVDAPWLVLG KHWIDLTRIL PLSLEEMEGT
201: RSTRKWNTSF KLSGLAESAV LNLSFDYSVV TSSVCDSTSK NVMLRRVGSV PSMDHRSPPL DDGKVVNEVS PSLSLNLSQS IDFLYEKLGE QNPQRSTGTE
301: VELGLETDKQ AADSDDSGKG VETFQQERSG LEESNDPNTE SSRIEIIDVH EILKDEDESV FEETYFIDQL SVAALKSEPS NLLPKHSVDG TPKSTFSSQV
401: ISESSESKSP SAMDDSTEKE NFLEVKSSYK AAKISMTSLS LDDITESVAN DFLNMLELEE CSYVYTSDGE PTSPRESLLR EFEKEAFASG NFLLDLNGEA
501: EYVSDIDEKS NDFSFSASSL DVGENKREGK SQLLIDRRKA KVLEDLETET LLRECDFDDN SFDNSLCVCS DGFGSPIELP VDKGLDLLPL GDNIGPSVWT
601: KGGGCIRSMN HLLFRESKEA SQLIMQVSVP VVLVSELGSD ILEILQIFAA SGIEGLCSEV NALIPLEDIM GKTIHEVVDV TKFKRTGQDC SDKSKGVVVQ
701: KPPGQLHLCS SNEEFGSSMC PSNVPLEDVT SLAIDEIYIL SIEGLKIQCS MSDQDPPSGI APKPMDQSDA LELIRFSLTL DEWLRLDQGM LENKDQDLAS
801: NGKGHTLRNK LTLALQVLLR DPSLNNEPIG ASMLALIQVE RSLDSPNSSL CSLAQEGRNK ESFGYDTQLW RITEIGLAGL KIEPGADHPW CTKSQQQSGS
901: RWLLANGTDK TIKCQASESK VIIVSNVQAT RKRLDTLWSI ISDRHHQEGD LSNSAASVPF TRNLDVIFSN EVTERS
Arabidopsis Description
PMIR2Protein PLASTID MOVEMENT IMPAIRED 1-RELATED 2 [Source:UniProtKB/Swiss-Prot;Acc:Q7Y219]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.