Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 2
- cytosol 2
- plasma membrane 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| VIT_11s0016g01610.t01 | Wine grape | cytosol | 15.99 | 74.6 |
| Solyc05g032750.2.1 | Tomato | nucleus | 55.02 | 58.61 |
| Os01t0714100-01 | Rice | cytosol | 19.56 | 58.23 |
| PGSC0003DMT400028119 | Potato | cytosol | 56.12 | 57.64 |
| PGSC0003DMT400053992 | Potato | nucleus | 53.66 | 55.59 |
| Solyc07g041180.2.1 | Tomato | nucleus | 52.98 | 55.13 |
| GSMUA_Achr1P05230_001 | Banana | nucleus | 48.38 | 51.96 |
| KRH37453 | Soybean | cytosol | 53.66 | 51.59 |
| CDY16548 | Canola | nucleus | 44.98 | 51.31 |
| CDY45081 | Canola | nucleus | 46.09 | 51.08 |
| Bra020112.1-P | Field mustard | nucleus | 46.26 | 50.94 |
| CDX92449 | Canola | nucleus | 42.43 | 50.92 |
| KRH12468 | Soybean | cytosol | 47.62 | 50.09 |
| AT5G20610.1 | Thale cress | nucleus | 48.3 | 48.8 |
| VIT_04s0008g01460.t01 | Wine grape | nucleus | 48.72 | 47.59 |
| KRH19252 | Soybean | nucleus | 31.63 | 47.57 |
| KRH02657 | Soybean | nucleus | 7.31 | 47.25 |
| Bra002315.1-P | Field mustard | nucleus | 46.34 | 46.03 |
| Zm00001d043666_P001 | Maize | nucleus | 41.67 | 42.79 |
| OQU87417 | Sorghum | nucleus | 41.75 | 42.4 |
| Zm00001d011716_P001 | Maize | nucleus | 41.33 | 42.33 |
| TraesCS3D01G248600.1 | Wheat | nucleus | 39.88 | 41.32 |
| HORVU3Hr1G067440.1 | Barley | plastid | 34.35 | 40.6 |
| TraesCS3B01G277400.1 | Wheat | cytosol | 40.39 | 39.22 |
| Zm00001d042647_P001 | Maize | mitochondrion | 6.04 | 37.77 |
| Zm00001d044668_P001 | Maize | extracellular | 23.98 | 37.25 |
| Zm00001d037913_P001 | Maize | plastid | 5.44 | 28.96 |
| Zm00001d020517_P001 | Maize | mitochondrion | 11.9 | 28.93 |
| VIT_18s0122g00830.t01 | Wine grape | nucleus | 18.28 | 25.03 |
Protein Annotations
| EntrezGene:100249046 | wikigene:100249046 | MapMan:20.5.6 | Gene3D:3.10.350.10 | EMBL:AM451482 | ProteinID:CAN67684 |
| ProteinID:CAN67684.1 | ProteinID:CCB51427 | ProteinID:CCB51427.1 | ncoils:Coil | UniProt:F6HGV1 | EMBL:FN595756 |
| InterPro:IPR018392 | InterPro:IPR019448 | InterPro:IPR036779 | EntrezGene:LOC100249046 | wikigene:LOC100249046 | InterPro:LysM_dom |
| InterPro:LysM_dom_sf | InterPro:NT-C2 | PFAM:PF01476 | PFAM:PF10358 | PFscan:PS51782 | PFscan:PS51840 |
| PANTHER:PTHR33414 | PANTHER:PTHR33414:SF1 | SMART:SM00257 | SUPFAM:SSF54106 | UniParc:UPI0002107F5E | ArrayExpress:VIT_11s0016g01690 |
| EnsemblPlantsGene:VIT_11s0016g01690 | EnsemblPlants:VIT_11s0016g01690.t01 | RefSeq:XP_002279012 | RefSeq:XP_002279012.1 | SEG:seg | : |
Description
No Description!
Coordinates
chr11:-:1339879..1346563
Molecular Weight (calculated)
128747.0 Da
IEP (calculated)
5.120
GRAVY (calculated)
-0.493
Length
1176 amino acids
Sequence
(BLAST)
(BLAST)
0001: MKSSQFFSGY EFSGVVWGFN SVTEMMFSKA EAAKRSDGDS ANAKLLLEVE KINKTLYSAK NPPRGLYSAS NARSKSAGKN HLMDSKSKPK YAKEDPEQKE
0101: KKSIWSWKAL KSLSHIRNRR FNCCFSLHVH LIEGLPSNLN DSSLTVHWKR KDGELVTHPA KVSRGIAEFE EKLNHTCSVY GSRNGPHHSA KYEAKHFLLY
0201: ASVFGAPELD LGKHRVDLTK LLPVTLEELE DDKSSGKWTT SFKLAGKAKG ATMNVSFGYV VIRDNFIPPT HKNVPELFNL KQNNLSIAKS VTKFDQGANI
0301: SKIKRGGSLP ESFIPRHPAS SQSVEGIKIL HEVLPMSRSE LSSSLNLLYQ KLDECKLDAS VDYRPELDNF SEPVEALKPN SNSLPDSSQQ NIENEGEDNE
0401: FSVIEQGIEL SSKELVRPEE DTVKASNVSA VGSLDIVDIN SGINVVLEED PKLDSQDEEY GSSSDKLVIQ DCESIENDLC TKESLMKELD SVLNSMSNLE
0501: TEALDFLKED ESHMEVKSNY KTDRKGKKAL SLDDVTESVA SEFLDMLGIE HSPFGLSSES EPESPRERLL RQFEKDTLAS GCSLFDFDVG DGNLGEFSDD
0601: VPTGFGLGNL SEDFKFSSAV QAPGDEHWLP SQVLRNNTRA KVLEDLETEA LMREWGLNEK AFQGSPRNSS GGFGSPINPA LEEPLQLPDL GEGLGPFIQT
0701: KNGGFVRSMN PSLFKNAKSG GSLIMQVSSP VVVPADMGSG IMDILQNLAS VGIEKLSTQA NKLMPLEDIT GRTMQQIAWE TVPSLEAPER QSLLQLGSEA
0801: GQDVTGGQKR VTGKSSVSRC NKLNSSSLGS DVGSEYVSLE DLAPLAMDKI EALSIEGLRI QSGMVEEDAP SNISAQSIGE ISALKGKGVN ITGSLGLEGA
0901: AGLQLLDIKD VDNDLDGLMG LSLTLDEWMR LDSGEIGDED QISERTSKIL AAHHANSLEF IRGGSKGERR RGRGSGRKCG LLGNNFTVAL MVQLRDPLRN
1001: YEPVGTPMLA LIQVERVFVP PKPKIYSTVS VVGNSKEEDD ESVSVAKEDV KDEKKEEQIS EEEAIPQFKI TEVHVAGLKT EPGKKKLWGT STQQQSGSRW
1101: LLANGMGKNN KHPFMKSKAV SKSTSPATTT VQPGETLWSI SSRVHGTGAK WKELAALNPH IRNPNVIFPN ETIRLC
0101: KKSIWSWKAL KSLSHIRNRR FNCCFSLHVH LIEGLPSNLN DSSLTVHWKR KDGELVTHPA KVSRGIAEFE EKLNHTCSVY GSRNGPHHSA KYEAKHFLLY
0201: ASVFGAPELD LGKHRVDLTK LLPVTLEELE DDKSSGKWTT SFKLAGKAKG ATMNVSFGYV VIRDNFIPPT HKNVPELFNL KQNNLSIAKS VTKFDQGANI
0301: SKIKRGGSLP ESFIPRHPAS SQSVEGIKIL HEVLPMSRSE LSSSLNLLYQ KLDECKLDAS VDYRPELDNF SEPVEALKPN SNSLPDSSQQ NIENEGEDNE
0401: FSVIEQGIEL SSKELVRPEE DTVKASNVSA VGSLDIVDIN SGINVVLEED PKLDSQDEEY GSSSDKLVIQ DCESIENDLC TKESLMKELD SVLNSMSNLE
0501: TEALDFLKED ESHMEVKSNY KTDRKGKKAL SLDDVTESVA SEFLDMLGIE HSPFGLSSES EPESPRERLL RQFEKDTLAS GCSLFDFDVG DGNLGEFSDD
0601: VPTGFGLGNL SEDFKFSSAV QAPGDEHWLP SQVLRNNTRA KVLEDLETEA LMREWGLNEK AFQGSPRNSS GGFGSPINPA LEEPLQLPDL GEGLGPFIQT
0701: KNGGFVRSMN PSLFKNAKSG GSLIMQVSSP VVVPADMGSG IMDILQNLAS VGIEKLSTQA NKLMPLEDIT GRTMQQIAWE TVPSLEAPER QSLLQLGSEA
0801: GQDVTGGQKR VTGKSSVSRC NKLNSSSLGS DVGSEYVSLE DLAPLAMDKI EALSIEGLRI QSGMVEEDAP SNISAQSIGE ISALKGKGVN ITGSLGLEGA
0901: AGLQLLDIKD VDNDLDGLMG LSLTLDEWMR LDSGEIGDED QISERTSKIL AAHHANSLEF IRGGSKGERR RGRGSGRKCG LLGNNFTVAL MVQLRDPLRN
1001: YEPVGTPMLA LIQVERVFVP PKPKIYSTVS VVGNSKEEDD ESVSVAKEDV KDEKKEEQIS EEEAIPQFKI TEVHVAGLKT EPGKKKLWGT STQQQSGSRW
1101: LLANGMGKNN KHPFMKSKAV SKSTSPATTT VQPGETLWSI SSRVHGTGAK WKELAALNPH IRNPNVIFPN ETIRLC
0001: MSKVNSEESS SSQKLLKEVE KISEALYVNK NPRGSVAGSN KTPTKPLSRS NLAEPKEKKS FWNWPLRAIN HVRNRRFNCC FSAQVHSIEG LPPIFQDLSL
0101: TVHWKRRDES LSTRPAKVSN GRAEFKDKLT HTCSVYGSRS GPHHSAKYEA KHFLLYVSLV GSPEIDLGKH RMDLTKLLPL TLEELQDEKS SGKWSTTFQL
0201: SGKANGATLS MSFGYTVVGD TRNPASSGST QNFRSSSNVK QTSNNTGLTR AISAKSSLGN GKSASRRYDH SIVNRESHPL SQNMEEIKDL HEILPAVQSD
0301: LGSSVNTLYQ KFDEEKVDPA NESQFEFDVV TKHIEPVESI SHEKEDANAL QSELVTGNET VVPFEEIKKA GEVPTAGSDE VGAENFPLEE PLVNGNETDV
0401: PFELLKKAGE VPTAGRDEVG TEILPPEEPL VNGNETDVPF EELMITGEAS IARSEEAVEI VTEELAPEEG NKISPKNEES VVPKDAEEVM NGEKDLKEMI
0501: MKDLESALKS VEMLEATASE DEEDRKKHGD KDKYFITPMK ETVPSCSRDV AESVACEFLD MLGIEHSPFG LSSESEPESP RERLLREFEM ETLAAGSLFD
0601: FSIEGDDPQL ECDENFPNEY ESDFEEGFDL ASLVHDIEEE YQLEAQARVS HPRAKMLEGL ETESLMREWG MNENTFQNSP PHNGRDAFHP ADFPVKEPFD
0701: LPPLGDGLGP VVQTKNGGFL RSMNPLLFRN SKAGGSLIMQ VSTPVVVPAE MGSGIMEILQ KLATAGIEKL SMQANKVMPL DDITGKTMEE VLWETSPTID
0801: IGDRDHVSER ESGDASGFVR GGERRTSFAA KPKKFGSSSG NNNFDSEYVS LEDLAPLAMD QIEALSLEGL RIQSGMSDED APSDITAQSI GDISAFQGKS
0901: GCVGLEGAAG LQLLDIKDDG DDDDDGLMGL SLTLDEWMKL DSGDIGDEDE INERTSKILA AHHANPLNFI RKGSKGEKRK GKKGRKCGLL GNTFTVALMV
1001: QLRDPLRNYE PVGAPMLSLI QVERLFVPPK PKIYSTVSEL KKTDEEEEAD ASDAKKEEKP MEEQGIPQYK ITEVHLTGMK SETDKKPWGI TTQQQQVQSG
1101: SRWLMANGMG KGNNKLPLMK PKLGSAKPGD KLWSVSGSGS KWKELGKMGK SNTHIRNPNV IMPK
0101: TVHWKRRDES LSTRPAKVSN GRAEFKDKLT HTCSVYGSRS GPHHSAKYEA KHFLLYVSLV GSPEIDLGKH RMDLTKLLPL TLEELQDEKS SGKWSTTFQL
0201: SGKANGATLS MSFGYTVVGD TRNPASSGST QNFRSSSNVK QTSNNTGLTR AISAKSSLGN GKSASRRYDH SIVNRESHPL SQNMEEIKDL HEILPAVQSD
0301: LGSSVNTLYQ KFDEEKVDPA NESQFEFDVV TKHIEPVESI SHEKEDANAL QSELVTGNET VVPFEEIKKA GEVPTAGSDE VGAENFPLEE PLVNGNETDV
0401: PFELLKKAGE VPTAGRDEVG TEILPPEEPL VNGNETDVPF EELMITGEAS IARSEEAVEI VTEELAPEEG NKISPKNEES VVPKDAEEVM NGEKDLKEMI
0501: MKDLESALKS VEMLEATASE DEEDRKKHGD KDKYFITPMK ETVPSCSRDV AESVACEFLD MLGIEHSPFG LSSESEPESP RERLLREFEM ETLAAGSLFD
0601: FSIEGDDPQL ECDENFPNEY ESDFEEGFDL ASLVHDIEEE YQLEAQARVS HPRAKMLEGL ETESLMREWG MNENTFQNSP PHNGRDAFHP ADFPVKEPFD
0701: LPPLGDGLGP VVQTKNGGFL RSMNPLLFRN SKAGGSLIMQ VSTPVVVPAE MGSGIMEILQ KLATAGIEKL SMQANKVMPL DDITGKTMEE VLWETSPTID
0801: IGDRDHVSER ESGDASGFVR GGERRTSFAA KPKKFGSSSG NNNFDSEYVS LEDLAPLAMD QIEALSLEGL RIQSGMSDED APSDITAQSI GDISAFQGKS
0901: GCVGLEGAAG LQLLDIKDDG DDDDDGLMGL SLTLDEWMKL DSGDIGDEDE INERTSKILA AHHANPLNFI RKGSKGEKRK GKKGRKCGLL GNTFTVALMV
1001: QLRDPLRNYE PVGAPMLSLI QVERLFVPPK PKIYSTVSEL KKTDEEEEAD ASDAKKEEKP MEEQGIPQYK ITEVHLTGMK SETDKKPWGI TTQQQQVQSG
1101: SRWLMANGMG KGNNKLPLMK PKLGSAKPGD KLWSVSGSGS KWKELGKMGK SNTHIRNPNV IMPK
Arabidopsis Description
PMIR1Protein PLASTID MOVEMENT IMPAIRED 1-RELATED 1 [Source:UniProtKB/Swiss-Prot;Acc:F4K5K6]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.