CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
extracellular 1
cytosol 1
plasma membrane 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os01t0714100-01	Rice	cytosol	30.77	14.18
KRH12468	Soybean	cytosol	50.0	8.14
GSMUA_Achr1P05230_001	Banana	nucleus	47.25	7.85
VIT_11s0016g01690.t01	Wine grape	cytosol	47.25	7.31
PGSC0003DMT400053992	Potato	nucleus	45.6	7.31
Solyc05g032750.2.1	Tomato	nucleus	43.96	7.25
Solyc07g041180.2.1	Tomato	nucleus	43.96	7.08
PGSC0003DMT400028119	Potato	cytosol	44.51	7.07
KRH37453	Soybean	cytosol	46.7	6.95
Zm00001d011716_P001	Maize	nucleus	38.46	6.1
Zm00001d043666_P001	Maize	nucleus	37.91	6.03
OQU87417	Sorghum	nucleus	37.91	5.96
CDX92449	Canola	nucleus	31.87	5.92
TraesCS3D01G248600.1	Wheat	nucleus	36.81	5.9
AT5G20610.1	Thale cress	nucleus	37.36	5.84
TraesCS3B01G277400.1	Wheat	cytosol	37.36	5.62
CDY16548	Canola	nucleus	31.32	5.53
Bra020112.1-P	Field mustard	nucleus	32.42	5.52
CDY45081	Canola	nucleus	31.87	5.47
KRH60483	Soybean	nucleus	24.73	5.26
KRH38751	Soybean	cytosol	24.73	5.24
KRH09253	Soybean	cytosol	24.73	5.23
KRH15624	Soybean	nucleus	30.77	5.13
KRH19252	Soybean	nucleus	21.98	5.12
KRH05392	Soybean	mitochondrion	30.22	5.04
Bra002315.1-P	Field mustard	nucleus	32.42	4.98
KRH41783	Soybean	nucleus	23.08	4.78
Zm00001d037913_P001	Maize	plastid	3.85	3.17
VIT_11s0016g01610.t01	Wine grape	cytosol	3.85	2.78
Zm00001d044668_P001	Maize	extracellular	11.54	2.77
Zm00001d020517_P001	Maize	mitochondrion	7.14	2.69
HORVU3Hr1G067440.1	Barley	plastid	10.44	1.91
Zm00001d042647_P001	Maize	mitochondrion	1.65	1.6

Protein Annotations

EMBL:ACUP02010313	EnsemblPlants:KRH02657	EnsemblPlantsGene:GLYMA_17G051700	Gene3D:3.10.350.10	InterPro:IPR018392	InterPro:IPR036779
InterPro:LysM_dom	InterPro:LysM_dom_sf	PANTHER:PTHR33414	PANTHER:PTHR33414:SF1	PFAM:PF01476	PFscan:PS51782
ProteinID:KRH02657	ProteinID:KRH02657.1	SEG:seg	SUPFAM:SSF54106	UniParc:UPI00023D5ED6	UniProt:K7MK21
MapMan:35.1	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr17:-:3922350..3924153

Molecular Weight (calculated)

20938.2 Da

IEP (calculated)

10.670

GRAVY (calculated)

-0.760

Length

182 amino acids

Sequence
(BLAST)

001: MSHLEYQCFL LQVERVFVPP KQKIYRHVSE AGKNNHECEI VAKVEMKANK EEKNSEEEAI HQFRITEVHV AGLKTEPLKK KFWGTSRRQQ QQQSGSRWLI
101: ANGMGKNNKN SLVKSKVVSK SSAPITTANV QPGDTLWSIS PRIYGTGTRW KELKELNPHI RNPNIKIPNK TSTWSARFNF LL

Best Arabidopsis Sequence Match ( AT5G20610.1 )
(BLAST)

0001: MSKVNSEESS SSQKLLKEVE KISEALYVNK NPRGSVAGSN KTPTKPLSRS NLAEPKEKKS FWNWPLRAIN HVRNRRFNCC FSAQVHSIEG LPPIFQDLSL
0101: TVHWKRRDES LSTRPAKVSN GRAEFKDKLT HTCSVYGSRS GPHHSAKYEA KHFLLYVSLV GSPEIDLGKH RMDLTKLLPL TLEELQDEKS SGKWSTTFQL
0201: SGKANGATLS MSFGYTVVGD TRNPASSGST QNFRSSSNVK QTSNNTGLTR AISAKSSLGN GKSASRRYDH SIVNRESHPL SQNMEEIKDL HEILPAVQSD
0301: LGSSVNTLYQ KFDEEKVDPA NESQFEFDVV TKHIEPVESI SHEKEDANAL QSELVTGNET VVPFEEIKKA GEVPTAGSDE VGAENFPLEE PLVNGNETDV
0401: PFELLKKAGE VPTAGRDEVG TEILPPEEPL VNGNETDVPF EELMITGEAS IARSEEAVEI VTEELAPEEG NKISPKNEES VVPKDAEEVM NGEKDLKEMI
0501: MKDLESALKS VEMLEATASE DEEDRKKHGD KDKYFITPMK ETVPSCSRDV AESVACEFLD MLGIEHSPFG LSSESEPESP RERLLREFEM ETLAAGSLFD
0601: FSIEGDDPQL ECDENFPNEY ESDFEEGFDL ASLVHDIEEE YQLEAQARVS HPRAKMLEGL ETESLMREWG MNENTFQNSP PHNGRDAFHP ADFPVKEPFD
0701: LPPLGDGLGP VVQTKNGGFL RSMNPLLFRN SKAGGSLIMQ VSTPVVVPAE MGSGIMEILQ KLATAGIEKL SMQANKVMPL DDITGKTMEE VLWETSPTID
0801: IGDRDHVSER ESGDASGFVR GGERRTSFAA KPKKFGSSSG NNNFDSEYVS LEDLAPLAMD QIEALSLEGL RIQSGMSDED APSDITAQSI GDISAFQGKS
0901: GCVGLEGAAG LQLLDIKDDG DDDDDGLMGL SLTLDEWMKL DSGDIGDEDE INERTSKILA AHHANPLNFI RKGSKGEKRK GKKGRKCGLL GNTFTVALMV
1001: QLRDPLRNYE PVGAPMLSLI QVERLFVPPK PKIYSTVSEL KKTDEEEEAD ASDAKKEEKP MEEQGIPQYK ITEVHLTGMK SETDKKPWGI TTQQQQVQSG
1101: SRWLMANGMG KGNNKLPLMK PKLGSAKPGD KLWSVSGSGS KWKELGKMGK SNTHIRNPNV IMPK

Arabidopsis Description

PMIR1Protein PLASTID MOVEMENT IMPAIRED 1-RELATED 1 [Source:UniProtKB/Swiss-Prot;Acc:F4K5K6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.