CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 2
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH60483	Soybean	nucleus	84.85	87.13
KRH09253	Soybean	cytosol	62.19	63.41
KRH38751	Soybean	cytosol	60.93	62.35
VIT_18s0122g00830.t01	Wine grape	nucleus	59.34	60.65
Solyc10g006330.2.1	Tomato	cytosol, nucleus	54.78	54.47
PGSC0003DMT400037294	Potato	cytosol	54.67	54.18
HORVU5Hr1G087920.1	Barley	cytosol	5.35	52.81
CDY35798	Canola	cytosol	48.29	52.41
GSMUA_Achr11P...	Banana	extracellular	40.77	52.26
CDX80727	Canola	cytosol	47.84	52.11
AT1G42550.1	Thale cress	nucleus	49.54	51.6
Bra034929.1-P	Field mustard	cytosol	48.75	51.5
Bra034930.1-P	Field mustard	cytosol	34.74	50.5
TraesCS5B01G357200.1	Wheat	cytosol	47.15	47.26
TraesCS5A01G355000.1	Wheat	cytosol	46.92	47.14
TraesCS5D01G362300.1	Wheat	cytosol	46.92	47.14
Os09t0553900-01	Rice	plasma membrane	47.27	47.0
HORVU5Hr1G079950.1	Barley	cytosol	46.58	46.37
Zm00001d021416_P001	Maize	cytosol	41.57	46.26
GSMUA_Achr1P02110_001	Banana	extracellular	34.97	45.48
GSMUA_Achr5P11690_001	Banana	endoplasmic reticulum, golgi	33.71	44.92
HORVU5Hr1G087970.1	Barley	cytosol, plastid	26.54	44.64
HORVU5Hr1G087930.1	Barley	cytosol	20.27	43.84
OQU89905	Sorghum	plastid	44.19	39.96
TraesCS1B01G215700.1	Wheat	cytosol	36.22	39.26
Os10t0539700-01	Rice	cytosol, plasma membrane	36.9	38.94
TraesCS1A01G201400.1	Wheat	cytosol	35.99	38.87
TraesCS1D01G204800.1	Wheat	cytosol	35.76	38.81
HORVU1Hr1G052010.1	Barley	cytosol	35.65	38.55
EER94579	Sorghum	cytosol, nucleus, plastid	36.9	37.63
Zm00001d029761_P001	Maize	cytosol	35.88	37.5
KRH02657	Soybean	nucleus	4.78	23.08
KRH19252	Soybean	nucleus	17.31	19.44
KRH12468	Soybean	cytosol	24.03	18.87
KRH37453	Soybean	cytosol	25.63	18.4
KRH15624	Soybean	nucleus	21.75	17.49
KRH05392	Soybean	mitochondrion	21.53	17.32

Protein Annotations

EMBL:ACUP02004781	EnsemblPlants:KRH41783	EnsemblPlantsGene:GLYMA_08G051000	EntrezGene:100793119	GO:GO:0005575	GO:GO:0005623
GO:GO:0008150	GO:GO:0009902	GO:GO:0009987	GO:GO:0016043	InterPro:IPR019448	InterPro:NT-C2
InterPro:PMI1	PANTHER:PTHR33414	PANTHER:PTHR33414:SF2	PFAM:PF10358	PFscan:PS51840	ProteinID:KRH41783
ProteinID:KRH41783.1	SEG:seg	UniParc:UPI00023C59B6	UniProt:K7L517	MapMan:20.5.5	:

Description

hypothetical protein

Coordinates

chr8:+:3972880..3975516

Molecular Weight (calculated)

97084.8 Da

IEP (calculated)

5.056

GRAVY (calculated)

-0.547

Length

878 amino acids

Sequence
(BLAST)

001: MADAKSNPNA QLLEELEALS ESLYKQHTST TTARRTTSLV LPRTSAPPIE DAKHDDGNSN KTRRRMSMSP WRSRPKPDDD ATAKAETKKL DDNTSTISSG
101: ESNKKGIWKW KPIRALSHIG MQKLSCLFSV EVVIAQGLPS SMNGLRLSVC VRKKETKDGA VKTMPSRVAL GAADFEETLF IRCHVYHTSN QGTAAKHIKF
201: EPRLFWIYLF SVDAKELDFG RSSVDLTELI RESIEKNQQG MRLRQWDTSF GLSGKAKGGE LVLKLGFQIM EKDGGVDIYN NNNNNHNNQV ENSKSSFGKL
301: SSFSSSFARK QSKTSFSMSS PRMTSRNDAW TPSQSGIGED IQGMDDLNLD DDPNPVPAQD SSSSTQKVDE PRSKEQVEDF DLPDFEVVDK GVEVQEKEED
401: GGEEAEEPVQ QEESTSSEVV KEVVLDHVHL TRLSELDSIA QQIKALESIM GEDDNKFTNI EEETEPQRLD ADEETVTKEF LQMLEDQENS DYYLFNQPEI
501: PPLKLEGHDD ASSAEDGESK VYLPDLGKGL GCVIQTKDGG YLASMNPFDI AVARKDAPKL AMQISRPFVL AMASHQSLTG FELFQKLADI GFDELSSKVL
601: SLMPIDEMVG KTAEQVAFEG IANAIIQGRN KEGASSSAAR IVSYLKSMGS AMSSGRRERI TTGLWNVEEE PLTAEKLLAF AMQKVESMTV EALKIQADMA
701: EELEAPFDIS AKKGEAGKDL LASAIPLEEW IRDQSYTKTA GAGCSDGEPE KVTLVLVVQL RDPMRRYEAV GGPVMVLIHV TSAAETKRKE KRFKVASMHV
801: GGFKLTSVIK KNALDSGKQR LTAMQWLVAY GLGKAGNKKG KQTLAKGQQQ DLLWSISSRI VADMWLKTMR NPDINLGK

Best Arabidopsis Sequence Match ( AT1G42550.1 )
(BLAST)

001: MAGEYSGSRS SNTQLLAELE ALSENLYQKP QVSVGNRRTN SLALPRSSVP SLVTSADEVS TARAEDLTVS KPRARRLSLS PWRSRPKLEV EEEENVTQSN
101: RIVKKPEESS SGSGVKEEKK GIWNWKPIRG LVRIGMQKLS CLLSVEVVAA QNLPASMNGL RLGVCVRKKE TKDGAVQTMP CRVSQGSADF EETLFIKCHV
201: YYSPANGKGS PAKFEARPFL FYLFAVDAKE LEFGRHVVDL SELIQESVEK MNYEGARVRQ WDMNWGLSGK AKGGELALKL GFQIMEKDGG AGIYSKQGEF
301: GMKPSSKPKN FANSFGRKQS KTSFSVPSPK MTSRSEAWTP ASGVESVSDF HGMEHLNLDE PEEKPEEKPV QKNDKPEQRA EDDQEEPDFE VVDKGVEFDD
401: DLETEKSDGT IGERSVEMKE QHVNVDDPRH IMRLTELDSI AKQIKALESM MKDESDGGDG ETESQRLDEE EQTVTKEFLQ LLEDEETEKL KFYQHKMDIS
501: ELRSGESVDD ESENYLSDLG KGIGCVVQTR DGGYLVSMNP FDTVVMRKDT PKLVMQISKQ IVVLPEAGPA TGFELFHRMA GSGEELESKI SSLMAIDELM
601: GKTGEQVAFE GIASAIIQGR NKERANTSAA RTVAAVKTMA NAMSSGRRER IMTGIWNVEE NPLTSAEEVL AVSLQKLEEM VVEGLKIQAD MVDDEAPFEV
701: SAAKGQKNPL ESTIPLEEWQ KEHRTQQKLT VLATVQLRDP TRRYEAVGGT VVVAVQAEEE EEKGLKVGSL HIGGVKKDAA EKRRLTAAQW LVEHGMGKKG
801: KKKSNIKKKE KEEEEEEMLW SLSSRVMADM WLKSIRNPDV KLH

Arabidopsis Description

PMI1Protein PLASTID MOVEMENT IMPAIRED 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9C8E6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.