CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 2
plastid 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH41783	Soybean	nucleus	87.13	84.85
KRH09253	Soybean	cytosol	65.03	64.58
KRH38751	Soybean	cytosol	64.33	64.1
VIT_18s0122g00830.t01	Wine grape	nucleus	63.63	63.33
HORVU5Hr1G087920.1	Barley	cytosol	5.73	55.06
Solyc10g006330.2.1	Tomato	cytosol, nucleus	56.84	55.04
PGSC0003DMT400037294	Potato	cytosol	56.96	54.97
GSMUA_Achr11P...	Banana	extracellular	43.16	53.87
CDY35798	Canola	cytosol	50.53	53.4
CDX80727	Canola	cytosol	50.06	53.1
Bra034929.1-P	Field mustard	cytosol	50.99	52.47
AT1G42550.1	Thale cress	nucleus	51.58	52.31
Bra034930.1-P	Field mustard	cytosol	36.49	51.66
TraesCS5A01G355000.1	Wheat	cytosol	48.66	47.6
TraesCS5B01G357200.1	Wheat	cytosol	48.54	47.37
TraesCS5D01G362300.1	Wheat	cytosol	48.19	47.14
Os09t0553900-01	Rice	plasma membrane	48.66	47.11
HORVU5Hr1G079950.1	Barley	cytosol	48.3	46.83
Zm00001d021416_P001	Maize	cytosol	43.04	46.64
GSMUA_Achr1P02110_001	Banana	extracellular	36.02	45.63
HORVU5Hr1G087970.1	Barley	cytosol, plastid	27.25	44.64
HORVU5Hr1G087930.1	Barley	cytosol	21.17	44.58
GSMUA_Achr5P11690_001	Banana	endoplasmic reticulum, golgi	34.27	44.46
OQU89905	Sorghum	plastid	46.2	40.68
TraesCS1B01G215700.1	Wheat	cytosol	37.54	39.63
TraesCS1A01G201400.1	Wheat	cytosol	37.43	39.36
TraesCS1D01G204800.1	Wheat	cytosol	37.08	39.18
Os10t0539700-01	Rice	cytosol, plasma membrane	37.78	38.82
HORVU1Hr1G052010.1	Barley	cytosol	36.84	38.79
EER94579	Sorghum	cytosol, nucleus, plastid	38.13	37.86
Zm00001d029761_P001	Maize	cytosol	37.19	37.86
KRH02657	Soybean	nucleus	5.26	24.73
KRH12468	Soybean	cytosol	24.8	18.96
KRH19252	Soybean	nucleus	17.31	18.93
KRH37453	Soybean	cytosol	26.43	18.48
KRH15624	Soybean	nucleus	22.92	17.95
KRH05392	Soybean	mitochondrion	22.57	17.69

Protein Annotations

EMBL:ACUP02003367	EnsemblPlants:KRH60483	EnsemblPlantsGene:GLYMA_05G243200	EntrezGene:100785837	GO:GO:0005575	GO:GO:0005623
GO:GO:0008150	GO:GO:0009902	GO:GO:0009987	GO:GO:0016043	InterPro:IPR019448	InterPro:NT-C2
InterPro:PMI1	PANTHER:PTHR33414	PANTHER:PTHR33414:SF2	PFAM:PF10358	PFscan:PS51840	ProteinID:KRH60483
ProteinID:KRH60483.1	SEG:seg	UniParc:UPI000233A6F4	UniProt:I1K5F5	MapMan:20.5.5	:

Description

hypothetical protein

Coordinates

chr5:+:41789764..41792714

Molecular Weight (calculated)

94335.4 Da

IEP (calculated)

4.948

GRAVY (calculated)

-0.560

Length

855 amino acids

Sequence
(BLAST)

001: MADAKSNPNA QLLEELEALS ESLYKQHTST TTRRTASLVL PRTSAPPIED AKDDDGSSNK ARRRMSMSPW RSRPKNDDAT AKAETKKLDG TSTISSGDSD
101: RKGIWKWKPI RALSHIGMQK LSCLFSVEVV AAQGLPSSMN GLRLSVCVRK KETKDGAVKT MPSRVSQGAA DFEETLFIRC HVYHTSNQGT AKQIKFEPRP
201: FWIYLFAVDA KELDFGRSSV DLTELIRESI EKNQQGTRVR QWDTSFGLSG KAKGGELVLK LGFQIMEKDG GVDIYNNQVE NSKSSSGKLS SFSSSFARKQ
301: SKTSFSMSSP RMTSRNDAWT PSQSGIGEDI QGMDDLNLDD PNPAQDSSSS TQKVDERSKE QVEDFDLPDF EVVDKGVEVQ EKEEDGGEEA EEPVQEESTS
401: SEVVKEVVLD HVHLTRLSEL DSIAQQIKAL ESMMGEDDKF TNVEEETEPQ RLDADEETVT REFLQMLEDQ DNSDYLFNQP EIPPLKLEGH EDASSEDGDS
501: KVYLPDLGKG LGCVIQTRDG GYLASMNPLD IAVARKDAPK LAMQMSRPFV LASHQSLTGF ELFQKLAGIG FDELSSKVLS LMPIDEMIGK TAEQVAFEGI
601: ANAIIQGRNK EGASSSAARI VSYLKSMGSA MSSGRRERIT TGLWNVEEEP LTAEKLLAFA MQKVESMTVE ALKIQADMAE ELEAPFDISA KKGEGGKDLL
701: ASVIPLEEWI RDHSYAKTVA GSDGEPEKVT LVLVVQLRDP LRRYEAVGGP VMVLIHATSA DTKGKEEEKR FKVTSMHVGG FKLTSAIKKN AWDSGKQRLT
801: AMQWLVAYGL GKAGNKKGKQ SLAKGQQDQL WSISSRIVAD MWLKTMRNPD INLGK

Best Arabidopsis Sequence Match ( AT1G42550.1 )
(BLAST)

001: MAGEYSGSRS SNTQLLAELE ALSENLYQKP QVSVGNRRTN SLALPRSSVP SLVTSADEVS TARAEDLTVS KPRARRLSLS PWRSRPKLEV EEEENVTQSN
101: RIVKKPEESS SGSGVKEEKK GIWNWKPIRG LVRIGMQKLS CLLSVEVVAA QNLPASMNGL RLGVCVRKKE TKDGAVQTMP CRVSQGSADF EETLFIKCHV
201: YYSPANGKGS PAKFEARPFL FYLFAVDAKE LEFGRHVVDL SELIQESVEK MNYEGARVRQ WDMNWGLSGK AKGGELALKL GFQIMEKDGG AGIYSKQGEF
301: GMKPSSKPKN FANSFGRKQS KTSFSVPSPK MTSRSEAWTP ASGVESVSDF HGMEHLNLDE PEEKPEEKPV QKNDKPEQRA EDDQEEPDFE VVDKGVEFDD
401: DLETEKSDGT IGERSVEMKE QHVNVDDPRH IMRLTELDSI AKQIKALESM MKDESDGGDG ETESQRLDEE EQTVTKEFLQ LLEDEETEKL KFYQHKMDIS
501: ELRSGESVDD ESENYLSDLG KGIGCVVQTR DGGYLVSMNP FDTVVMRKDT PKLVMQISKQ IVVLPEAGPA TGFELFHRMA GSGEELESKI SSLMAIDELM
601: GKTGEQVAFE GIASAIIQGR NKERANTSAA RTVAAVKTMA NAMSSGRRER IMTGIWNVEE NPLTSAEEVL AVSLQKLEEM VVEGLKIQAD MVDDEAPFEV
701: SAAKGQKNPL ESTIPLEEWQ KEHRTQQKLT VLATVQLRDP TRRYEAVGGT VVVAVQAEEE EEKGLKVGSL HIGGVKKDAA EKRRLTAAQW LVEHGMGKKG
801: KKKSNIKKKE KEEEEEEMLW SLSSRVMADM WLKSIRNPDV KLH

Arabidopsis Description

PMI1Protein PLASTID MOVEMENT IMPAIRED 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9C8E6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.