CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
plastid 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY35798	Canola	cytosol	93.3	92.95
AT1G42550.1	Thale cress	nucleus	84.0	80.31
VIT_18s0122g00830.t01	Wine grape	nucleus	56.7	53.2
Solyc10g006330.2.1	Tomato	cytosol, nucleus	54.96	50.17
KRH60483	Soybean	nucleus	53.1	50.06
PGSC0003DMT400037294	Potato	cytosol	54.71	49.77
KRH09253	Soybean	cytosol	52.61	49.25
KRH38751	Soybean	cytosol	52.23	49.07
GSMUA_Achr11P...	Banana	extracellular	40.69	47.88
KRH41783	Soybean	nucleus	52.11	47.84
HORVU5Hr1G087920.1	Barley	cytosol	4.84	43.82
Zm00001d021416_P001	Maize	cytosol	41.69	42.59
TraesCS5D01G362300.1	Wheat	cytosol	46.15	42.56
Os09t0553900-01	Rice	plasma membrane	46.53	42.47
TraesCS5A01G355000.1	Wheat	cytosol	46.03	42.45
TraesCS5B01G357200.1	Wheat	cytosol	45.53	41.9
HORVU5Hr1G079950.1	Barley	cytosol	45.41	41.5
GSMUA_Achr1P02110_001	Banana	extracellular	34.49	41.19
GSMUA_Achr5P11690_001	Banana	endoplasmic reticulum, golgi	32.51	39.76
HORVU5Hr1G087970.1	Barley	cytosol, plastid	25.19	38.89
HORVU5Hr1G087930.1	Barley	cytosol	19.35	38.42
TraesCS1B01G215700.1	Wheat	cytosol	38.21	38.02
TraesCS1A01G201400.1	Wheat	cytosol	37.72	37.39
OQU89905	Sorghum	plastid	45.04	37.38
Os10t0539700-01	Rice	cytosol, plasma membrane	38.59	37.38
TraesCS1D01G204800.1	Wheat	cytosol	37.34	37.21
HORVU1Hr1G052010.1	Barley	cytosol	36.97	36.7
Zm00001d029761_P001	Maize	cytosol	36.85	35.36
EER94579	Sorghum	cytosol, nucleus, plastid	36.97	34.61
CDY52626	Canola	nucleus	21.59	19.82
CDX88218	Canola	nucleus	21.46	19.64
CDX92449	Canola	nucleus	22.08	18.16
CDY45081	Canola	nucleus	23.08	17.53
CDY16548	Canola	nucleus	21.96	17.17

Protein Annotations

EnsemblPlants:CDX80727	EnsemblPlantsGene:GSBRNA2T00134037001	GO:GO:0008150	GO:GO:0009902	GO:GO:0009987	GO:GO:0016043
InterPro:IPR019448	InterPro:NT-C2	InterPro:PMI1	PANTHER:PTHR33414	PANTHER:PTHR33414:SF2	PFAM:PF10358
PFscan:PS51840	ProteinID:CDX80727	ProteinID:CDX80727.1	SEG:seg	UniParc:UPI0004EE6BDF	MapMan:20.5.5

Description

BnaC08g05610D

Coordinates

chrLK031822:-:1475291..1478863

Molecular Weight (calculated)

89167.0 Da

IEP (calculated)

4.933

GRAVY (calculated)

-0.563

Length

806 amino acids

Sequence
(BLAST)

001: MAAEYSGSRS SNTQLLAELE ALSENLYQKP QAPVGRRTNS LALPRSSVPS LVTSAEDVTV PKPRSRRLSL SPWRSRPKLE AEEEENMTQK ISIKTPEESS
101: LVGSKAKEER KGIWNWKPIR GLARIGMQKL SCLLSVEVVA AQNLPASMNG LRLGVCVRKK ETKDGAVQTM PCRVSQGSAD FEETLFIKCH VYYSPANGKG
201: APAKFEARPF LVYLFAVDAK ELEFGRNMVD LSDLIQESVE KMSYEGARVR QWDMSWGLSG KAKGGELVLK LGFQIMEKDG GAGIYGKQGE LGIKPSSKPK
301: HFSGSFGRKQ SKTSFSVPSP KMTSQSQTWT PASGVEAASD LQRIEHLNLD EPEEKPAPKT EEPEQRVEED DQEPDFEVVD KGEDQEPEFE VVDKGVELTE
401: LDSIAKQIKA LESMMKDDSN GAEGEESPRL DEEEQTVTKE FLQLLEDEES ENLKFYQHKM EISELRSGES AGEESDNYLS DLGKGIGCVV QTRDGGYLVS
501: MNPFDTVVMR KDTPKLVMQI SKQIVVLPEA GSATGFELFH RMAGSGKELD SKICLLMAMD ELMGKTGEQV AFEGIASAII QGRNKERANT SAARTVAAVK
601: TMANAMNSGR RERIMTGIWN VEENPLASAE EVLAVSLQKL EEIVIEGLKI QADMVEDDAP FEVSAAKGQP NPLESTIPLD EWLKENRKQK TLTVFATVQL
701: RDPTRRYEAV GGTVVVAVQA EDQEDGLKVG SLHVGGVKSN GAEKRRLTAA QWLVEYGMGK KGKKKSNVKR KEKEEEDEEL LWSLSSRVMA DMWLKSIRNP
801: DVKLHS

Best Arabidopsis Sequence Match ( AT1G42550.1 )
(BLAST)

001: MAGEYSGSRS SNTQLLAELE ALSENLYQKP QVSVGNRRTN SLALPRSSVP SLVTSADEVS TARAEDLTVS KPRARRLSLS PWRSRPKLEV EEEENVTQSN
101: RIVKKPEESS SGSGVKEEKK GIWNWKPIRG LVRIGMQKLS CLLSVEVVAA QNLPASMNGL RLGVCVRKKE TKDGAVQTMP CRVSQGSADF EETLFIKCHV
201: YYSPANGKGS PAKFEARPFL FYLFAVDAKE LEFGRHVVDL SELIQESVEK MNYEGARVRQ WDMNWGLSGK AKGGELALKL GFQIMEKDGG AGIYSKQGEF
301: GMKPSSKPKN FANSFGRKQS KTSFSVPSPK MTSRSEAWTP ASGVESVSDF HGMEHLNLDE PEEKPEEKPV QKNDKPEQRA EDDQEEPDFE VVDKGVEFDD
401: DLETEKSDGT IGERSVEMKE QHVNVDDPRH IMRLTELDSI AKQIKALESM MKDESDGGDG ETESQRLDEE EQTVTKEFLQ LLEDEETEKL KFYQHKMDIS
501: ELRSGESVDD ESENYLSDLG KGIGCVVQTR DGGYLVSMNP FDTVVMRKDT PKLVMQISKQ IVVLPEAGPA TGFELFHRMA GSGEELESKI SSLMAIDELM
601: GKTGEQVAFE GIASAIIQGR NKERANTSAA RTVAAVKTMA NAMSSGRRER IMTGIWNVEE NPLTSAEEVL AVSLQKLEEM VVEGLKIQAD MVDDEAPFEV
701: SAAKGQKNPL ESTIPLEEWQ KEHRTQQKLT VLATVQLRDP TRRYEAVGGT VVVAVQAEEE EEKGLKVGSL HIGGVKKDAA EKRRLTAAQW LVEHGMGKKG
801: KKKSNIKKKE KEEEEEEMLW SLSSRVMADM WLKSIRNPDV KLH

Arabidopsis Description

PMI1Protein PLASTID MOVEMENT IMPAIRED 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9C8E6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.