Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 2
- plasma membrane 1
- plastid 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400028119 | Potato | cytosol | 88.95 | 85.76 |
| VIT_11s0016g01610.t01 | Wine grape | cytosol | 14.76 | 64.68 |
| Solyc07g041180.2.1 | Tomato | nucleus | 61.87 | 60.44 |
| VIT_11s0016g01690.t01 | Wine grape | cytosol | 58.61 | 55.02 |
| Os01t0714100-01 | Rice | cytosol | 19.57 | 54.68 |
| GSMUA_Achr1P05230_001 | Banana | nucleus | 47.55 | 47.95 |
| KRH12468 | Soybean | cytosol | 48.46 | 47.85 |
| KRH37453 | Soybean | cytosol | 50.63 | 45.71 |
| CDY16548 | Canola | nucleus | 42.57 | 45.59 |
| CDX92449 | Canola | nucleus | 40.4 | 45.51 |
| CDY45081 | Canola | nucleus | 43.21 | 44.96 |
| Bra020112.1-P | Field mustard | nucleus | 43.39 | 44.85 |
| AT5G20610.1 | Thale cress | nucleus | 47.1 | 44.67 |
| KRH19252 | Soybean | nucleus | 31.16 | 43.99 |
| KRH02657 | Soybean | nucleus | 7.25 | 43.96 |
| Bra002315.1-P | Field mustard | nucleus | 43.48 | 40.54 |
| Zm00001d011716_P001 | Maize | nucleus | 42.03 | 40.42 |
| Zm00001d043666_P001 | Maize | nucleus | 41.67 | 40.17 |
| OQU87417 | Sorghum | nucleus | 42.12 | 40.16 |
| TraesCS3D01G248600.1 | Wheat | nucleus | 39.49 | 38.41 |
| HORVU3Hr1G067440.1 | Barley | plastid | 34.6 | 38.39 |
| Solyc08g062500.2.1 | Tomato | mitochondrion | 36.14 | 38.18 |
| Zm00001d042647_P001 | Maize | mitochondrion | 6.34 | 37.23 |
| TraesCS3B01G277400.1 | Wheat | cytosol | 40.49 | 36.91 |
| Zm00001d044668_P001 | Maize | extracellular | 24.73 | 36.06 |
| Zm00001d037913_P001 | Maize | plastid | 5.62 | 28.05 |
| Zm00001d020517_P001 | Maize | mitochondrion | 11.96 | 27.27 |
| Solyc10g006330.2.1 | Tomato | cytosol, nucleus | 17.3 | 21.63 |
Protein Annotations
| EnsemblPlants:Solyc05g032750.2.1 | EnsemblPlantsGene:Solyc05g032750.2 | Gene3D:3.10.350.10 | InterPro:IPR018392 | InterPro:IPR019448 | InterPro:IPR036779 |
| InterPro:LysM_dom | InterPro:LysM_dom_sf | InterPro:NT-C2 | ncoils:Coil | PANTHER:PTHR33414 | PANTHER:PTHR33414:SF1 |
| PFAM:PF01476 | PFAM:PF10358 | PFscan:PS51782 | PFscan:PS51840 | SEG:seg | SMART:SM00257 |
| SUPFAM:SSF54106 | UniParc:UPI00027660C0 | UniProt:K4C056 | MapMan:20.5.6 | : | : |
Description
No Description!
Coordinates
chr5:-:45086491..45090595
Molecular Weight (calculated)
121818.0 Da
IEP (calculated)
4.691
GRAVY (calculated)
-0.523
Length
1104 amino acids
Sequence
(BLAST)
(BLAST)
0001: MSTASSRSKS IGKARLPEPK SKNKDSARDL LDKDSNNKSM WSWKSLKSLT HVKNQRFNCS FSLQVHCIEG IPAFFNDLSL VVHWRRRHAE LMTCPVLVSQ
0101: GVAHFEEDLS YTCSIYGSRN GPHHSAKYEP KHCLLYASVY ATPELDLGKH RVDLTRLLPL TLEELEDERS SGRWTTSFKL SGKAKGATMN VSFGYHIVGN
0201: GNTSGTLPSN RNVLGGQNSG AAKLLAQSER SDELSIIRRA GSLPAWSSYS PQSAEDVKDL HEILPLPSSD LYKSVEVLYQ KFEEAKLEAP FEFKPEIDVF
0301: SHTVDNLKPE LALLLDPVKG NVENECEIGD FSVIEQGIEH SLKELEGKED DFVESVDDAV TETLVPDSTL KMPIAEAAQP VLLAEVLDSE NEDLAVSANN
0401: FETDESAKEL IMRELESALN SFSDLENEGL YSREHENEVI KNDGYLDAKE NYKELKKGKS LSMDYITESV ASDFLDMLGI EHSQFGPSSE SEPDSPRERL
0501: LRQFEKDILA GGCSLFNLDM DIEEFAIDAP SVSQWRNISE NFGYSSSAQL YEEKPKIAIE ETSNKTRASM LEDLETEALM REWGLNEKSF ECSPPKSSCG
0601: FGSPIDMPLE DPYQLPPLGE GLGNLLQTKN GGFLRSMNPA IFNDAKSGGS LIMQVSSPLV VPAEMGSGIM DILQHLASIG IEKLSMQASK LMPLEDITGK
0701: TVEQIAWENA PSLEGPERQN LFEHEFEFGQ NLESVQSKKA KSHGPTSSKL ETSSTTHMGT EYVSLEDLAP LAMDKIEALS IEGLRIQTGM SDEDAPSNIS
0801: AQSIGNFSAF EGQKVNLGGA VGLEGAGGLK LLDIKDNGDD VDGLMGLSLT LDEWMRLDSG EIDDEDEISE RTSKLLAAHH AISTDLFQDR SKGEKRRGKG
0901: RKCGLLGNNF TVALMVQLRD PLRNYEPVGT PMLALVQVER VFVPPKPKIY STVSEVRNNN EDDDDESAPP KNDSNVDIKE EKIPQDEPIA QYKITEVHVA
1001: GLKSEQGKKK LWGSTTQEQS GSRWLVANGM GKKNKHPFMK SKAANKSSKE AASSATTTVQ PGDTLWSISS RVHGTGTKWK DIAALNPHIR NPNVILPNET
1101: IRLR
0101: GVAHFEEDLS YTCSIYGSRN GPHHSAKYEP KHCLLYASVY ATPELDLGKH RVDLTRLLPL TLEELEDERS SGRWTTSFKL SGKAKGATMN VSFGYHIVGN
0201: GNTSGTLPSN RNVLGGQNSG AAKLLAQSER SDELSIIRRA GSLPAWSSYS PQSAEDVKDL HEILPLPSSD LYKSVEVLYQ KFEEAKLEAP FEFKPEIDVF
0301: SHTVDNLKPE LALLLDPVKG NVENECEIGD FSVIEQGIEH SLKELEGKED DFVESVDDAV TETLVPDSTL KMPIAEAAQP VLLAEVLDSE NEDLAVSANN
0401: FETDESAKEL IMRELESALN SFSDLENEGL YSREHENEVI KNDGYLDAKE NYKELKKGKS LSMDYITESV ASDFLDMLGI EHSQFGPSSE SEPDSPRERL
0501: LRQFEKDILA GGCSLFNLDM DIEEFAIDAP SVSQWRNISE NFGYSSSAQL YEEKPKIAIE ETSNKTRASM LEDLETEALM REWGLNEKSF ECSPPKSSCG
0601: FGSPIDMPLE DPYQLPPLGE GLGNLLQTKN GGFLRSMNPA IFNDAKSGGS LIMQVSSPLV VPAEMGSGIM DILQHLASIG IEKLSMQASK LMPLEDITGK
0701: TVEQIAWENA PSLEGPERQN LFEHEFEFGQ NLESVQSKKA KSHGPTSSKL ETSSTTHMGT EYVSLEDLAP LAMDKIEALS IEGLRIQTGM SDEDAPSNIS
0801: AQSIGNFSAF EGQKVNLGGA VGLEGAGGLK LLDIKDNGDD VDGLMGLSLT LDEWMRLDSG EIDDEDEISE RTSKLLAAHH AISTDLFQDR SKGEKRRGKG
0901: RKCGLLGNNF TVALMVQLRD PLRNYEPVGT PMLALVQVER VFVPPKPKIY STVSEVRNNN EDDDDESAPP KNDSNVDIKE EKIPQDEPIA QYKITEVHVA
1001: GLKSEQGKKK LWGSTTQEQS GSRWLVANGM GKKNKHPFMK SKAANKSSKE AASSATTTVQ PGDTLWSISS RVHGTGTKWK DIAALNPHIR NPNVILPNET
1101: IRLR
0001: MSKVNSEESS SSQKLLKEVE KISEALYVNK NPRGSVAGSN KTPTKPLSRS NLAEPKEKKS FWNWPLRAIN HVRNRRFNCC FSAQVHSIEG LPPIFQDLSL
0101: TVHWKRRDES LSTRPAKVSN GRAEFKDKLT HTCSVYGSRS GPHHSAKYEA KHFLLYVSLV GSPEIDLGKH RMDLTKLLPL TLEELQDEKS SGKWSTTFQL
0201: SGKANGATLS MSFGYTVVGD TRNPASSGST QNFRSSSNVK QTSNNTGLTR AISAKSSLGN GKSASRRYDH SIVNRESHPL SQNMEEIKDL HEILPAVQSD
0301: LGSSVNTLYQ KFDEEKVDPA NESQFEFDVV TKHIEPVESI SHEKEDANAL QSELVTGNET VVPFEEIKKA GEVPTAGSDE VGAENFPLEE PLVNGNETDV
0401: PFELLKKAGE VPTAGRDEVG TEILPPEEPL VNGNETDVPF EELMITGEAS IARSEEAVEI VTEELAPEEG NKISPKNEES VVPKDAEEVM NGEKDLKEMI
0501: MKDLESALKS VEMLEATASE DEEDRKKHGD KDKYFITPMK ETVPSCSRDV AESVACEFLD MLGIEHSPFG LSSESEPESP RERLLREFEM ETLAAGSLFD
0601: FSIEGDDPQL ECDENFPNEY ESDFEEGFDL ASLVHDIEEE YQLEAQARVS HPRAKMLEGL ETESLMREWG MNENTFQNSP PHNGRDAFHP ADFPVKEPFD
0701: LPPLGDGLGP VVQTKNGGFL RSMNPLLFRN SKAGGSLIMQ VSTPVVVPAE MGSGIMEILQ KLATAGIEKL SMQANKVMPL DDITGKTMEE VLWETSPTID
0801: IGDRDHVSER ESGDASGFVR GGERRTSFAA KPKKFGSSSG NNNFDSEYVS LEDLAPLAMD QIEALSLEGL RIQSGMSDED APSDITAQSI GDISAFQGKS
0901: GCVGLEGAAG LQLLDIKDDG DDDDDGLMGL SLTLDEWMKL DSGDIGDEDE INERTSKILA AHHANPLNFI RKGSKGEKRK GKKGRKCGLL GNTFTVALMV
1001: QLRDPLRNYE PVGAPMLSLI QVERLFVPPK PKIYSTVSEL KKTDEEEEAD ASDAKKEEKP MEEQGIPQYK ITEVHLTGMK SETDKKPWGI TTQQQQVQSG
1101: SRWLMANGMG KGNNKLPLMK PKLGSAKPGD KLWSVSGSGS KWKELGKMGK SNTHIRNPNV IMPK
0101: TVHWKRRDES LSTRPAKVSN GRAEFKDKLT HTCSVYGSRS GPHHSAKYEA KHFLLYVSLV GSPEIDLGKH RMDLTKLLPL TLEELQDEKS SGKWSTTFQL
0201: SGKANGATLS MSFGYTVVGD TRNPASSGST QNFRSSSNVK QTSNNTGLTR AISAKSSLGN GKSASRRYDH SIVNRESHPL SQNMEEIKDL HEILPAVQSD
0301: LGSSVNTLYQ KFDEEKVDPA NESQFEFDVV TKHIEPVESI SHEKEDANAL QSELVTGNET VVPFEEIKKA GEVPTAGSDE VGAENFPLEE PLVNGNETDV
0401: PFELLKKAGE VPTAGRDEVG TEILPPEEPL VNGNETDVPF EELMITGEAS IARSEEAVEI VTEELAPEEG NKISPKNEES VVPKDAEEVM NGEKDLKEMI
0501: MKDLESALKS VEMLEATASE DEEDRKKHGD KDKYFITPMK ETVPSCSRDV AESVACEFLD MLGIEHSPFG LSSESEPESP RERLLREFEM ETLAAGSLFD
0601: FSIEGDDPQL ECDENFPNEY ESDFEEGFDL ASLVHDIEEE YQLEAQARVS HPRAKMLEGL ETESLMREWG MNENTFQNSP PHNGRDAFHP ADFPVKEPFD
0701: LPPLGDGLGP VVQTKNGGFL RSMNPLLFRN SKAGGSLIMQ VSTPVVVPAE MGSGIMEILQ KLATAGIEKL SMQANKVMPL DDITGKTMEE VLWETSPTID
0801: IGDRDHVSER ESGDASGFVR GGERRTSFAA KPKKFGSSSG NNNFDSEYVS LEDLAPLAMD QIEALSLEGL RIQSGMSDED APSDITAQSI GDISAFQGKS
0901: GCVGLEGAAG LQLLDIKDDG DDDDDGLMGL SLTLDEWMKL DSGDIGDEDE INERTSKILA AHHANPLNFI RKGSKGEKRK GKKGRKCGLL GNTFTVALMV
1001: QLRDPLRNYE PVGAPMLSLI QVERLFVPPK PKIYSTVSEL KKTDEEEEAD ASDAKKEEKP MEEQGIPQYK ITEVHLTGMK SETDKKPWGI TTQQQQVQSG
1101: SRWLMANGMG KGNNKLPLMK PKLGSAKPGD KLWSVSGSGS KWKELGKMGK SNTHIRNPNV IMPK
Arabidopsis Description
PMIR1Protein PLASTID MOVEMENT IMPAIRED 1-RELATED 1 [Source:UniProtKB/Swiss-Prot;Acc:F4K5K6]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.