Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 2
- plasma membrane 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc05g032750.2.1 | Tomato | nucleus | 85.76 | 88.95 |
| VIT_11s0016g01610.t01 | Wine grape | cytosol | 14.06 | 63.89 |
| PGSC0003DMT400053992 | Potato | nucleus | 62.36 | 62.91 |
| VIT_11s0016g01690.t01 | Wine grape | cytosol | 57.64 | 56.12 |
| Os01t0714100-01 | Rice | cytosol | 18.43 | 53.42 |
| KRH12468 | Soybean | cytosol | 48.91 | 50.09 |
| GSMUA_Achr1P05230_001 | Banana | nucleus | 47.34 | 49.5 |
| KRH37453 | Soybean | cytosol | 50.48 | 47.26 |
| CDX92449 | Canola | nucleus | 40.17 | 46.94 |
| CDY16548 | Canola | nucleus | 41.83 | 46.46 |
| CDY45081 | Canola | nucleus | 42.45 | 45.81 |
| Bra020112.1-P | Field mustard | nucleus | 42.62 | 45.69 |
| AT5G20610.1 | Thale cress | nucleus | 46.03 | 45.27 |
| KRH02657 | Soybean | nucleus | 7.07 | 44.51 |
| KRH19252 | Soybean | nucleus | 29.61 | 43.35 |
| Bra002315.1-P | Field mustard | nucleus | 42.97 | 41.55 |
| Zm00001d043666_P001 | Maize | nucleus | 40.7 | 40.7 |
| Zm00001d011716_P001 | Maize | nucleus | 40.79 | 40.68 |
| OQU87417 | Sorghum | nucleus | 41.05 | 40.59 |
| TraesCS3D01G248600.1 | Wheat | nucleus | 38.86 | 39.21 |
| HORVU3Hr1G067440.1 | Barley | plastid | 34.06 | 39.2 |
| PGSC0003DMT400021201 | Potato | cytosol | 36.33 | 37.58 |
| TraesCS3B01G277400.1 | Wheat | cytosol | 38.86 | 36.75 |
| Zm00001d042647_P001 | Maize | mitochondrion | 6.03 | 36.7 |
| Zm00001d044668_P001 | Maize | extracellular | 24.02 | 36.33 |
| Zm00001d037913_P001 | Maize | plastid | 5.5 | 28.51 |
| Zm00001d020517_P001 | Maize | mitochondrion | 11.35 | 26.86 |
| PGSC0003DMT400037294 | Potato | cytosol | 17.38 | 22.46 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400028119 | EnsemblPlantsGene:PGSC0003DMG400010847 | Gene3D:3.10.350.10 | InterPro:IPR018392 | InterPro:IPR019448 | InterPro:IPR036779 |
| InterPro:LysM_dom | InterPro:LysM_dom_sf | InterPro:NT-C2 | ncoils:Coil | PANTHER:PTHR33414 | PANTHER:PTHR33414:SF1 |
| PFAM:PF01476 | PFAM:PF10358 | PFscan:PS51782 | PFscan:PS51840 | PGSC:PGSC0003DMG400010847 | SEG:seg |
| SMART:SM00257 | SUPFAM:SSF54106 | UniParc:UPI0002959D69 | UniProt:M1AQR0 | MapMan:20.5.6 | : |
Description
Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400010847]
Coordinates
chr5:+:29036335..29040680
Molecular Weight (calculated)
126693.0 Da
IEP (calculated)
4.709
GRAVY (calculated)
-0.578
Length
1145 amino acids
Sequence
(BLAST)
(BLAST)
0001: MDSRKKIGEK PGNGKLLNDI ETISKALYLD KTQPRLLMST ASSRSKSVGR ARLPEPKSKN KDSGRDLLEK DSNKKSTWSW KSLKSLTHVK NQRFNCCFSL
0101: QVHCIEGIPA FFNDLSLVVY WRRRDGELMT CPVLVCEGVA EFEEELSYTC SIYGSRNGPH HSAKYEAKHC LLYASVYATP ELDLGKHRVD LTRLLPLTLE
0201: ELEDERSSGK WTTSFKLSGK AKGASMNVSF GYHIVGNGNT SGTLPSNRDV LEGRNLRQNS GAAKLLAQSE ESDELSIIRR SGSLPAWSSY SQQSAEDVKD
0301: LHEILPVPNS DLYKSVEVLY QKFEEEKLEA SFEFKPEIDV FSNTVDNLKP KLALLSDPVK GNVENECEIG DFSVIEQGIE HPLKELEGKE DDSVKSVDDA
0401: VTERLVPDST LKMAIEEEAQ PVLLAKGLDS ENEDLAVSAN NFETDESAKE LIMRELESAL NSFSDLENEG LYSQEHENEV RNNDGYLDAK ENYKELRKGK
0501: SLSVDYITES VASDFLDMLG IEHSPFGPSS ESEPDSPRER LLRQFEKDTL AGGCSLFNLD MDIEEFSSDA PSVSQWRSIS ENFGYSSSAQ SYEEIPKIAI
0601: EETSNKTRAY MLEDLETEAL MREWGLNEKS FECSPPKSSC GFGSPIDMPP EDPYQLPPLG EGLGNLLQTK NGGFLRSMNP AIFNDAKSGG SLIMQVSSPL
0701: VVPAEMGSGI MDILQHLASI GIEKLSMQAS KLMPLDDITG KTVEQIAWEN APSLEGPERQ DLFQHEFEFG QNMESIQSKK AKSHGSMSSK LETSSTTHMN
0801: AEYVSLEDLA PLAMDKIEAL SIEGLRIQTG MSDEDAPSNI SAQSIGKFSA FEEQKVNLGG AVGLEGAGGL KLLDIKDNGD DVDGLMGLSL TLDEWMRLDS
0901: GEIDDEDEIS ERTSKLLAAH HAISTDLFQG RSKGEKRRGK SRKCGLLGNN FTVALMVQLR DPLRNYEPVG TPMLALVQVE RVFVPPKPKI NSKVSEVRNN
1001: NEDDDDESAP PKNDSNVDIK EEKIPEVEPI AQYKITEVHV AGLKSEQGKK KLWGSTTQEQ SGSRWLVANG MGKKNKHPFM KSKASNKSSK EAASSATTTV
1101: QLGDTLWSIS SRVHGTGTKW KDIAALNPHI RNPNVILPNE TIRLR
0101: QVHCIEGIPA FFNDLSLVVY WRRRDGELMT CPVLVCEGVA EFEEELSYTC SIYGSRNGPH HSAKYEAKHC LLYASVYATP ELDLGKHRVD LTRLLPLTLE
0201: ELEDERSSGK WTTSFKLSGK AKGASMNVSF GYHIVGNGNT SGTLPSNRDV LEGRNLRQNS GAAKLLAQSE ESDELSIIRR SGSLPAWSSY SQQSAEDVKD
0301: LHEILPVPNS DLYKSVEVLY QKFEEEKLEA SFEFKPEIDV FSNTVDNLKP KLALLSDPVK GNVENECEIG DFSVIEQGIE HPLKELEGKE DDSVKSVDDA
0401: VTERLVPDST LKMAIEEEAQ PVLLAKGLDS ENEDLAVSAN NFETDESAKE LIMRELESAL NSFSDLENEG LYSQEHENEV RNNDGYLDAK ENYKELRKGK
0501: SLSVDYITES VASDFLDMLG IEHSPFGPSS ESEPDSPRER LLRQFEKDTL AGGCSLFNLD MDIEEFSSDA PSVSQWRSIS ENFGYSSSAQ SYEEIPKIAI
0601: EETSNKTRAY MLEDLETEAL MREWGLNEKS FECSPPKSSC GFGSPIDMPP EDPYQLPPLG EGLGNLLQTK NGGFLRSMNP AIFNDAKSGG SLIMQVSSPL
0701: VVPAEMGSGI MDILQHLASI GIEKLSMQAS KLMPLDDITG KTVEQIAWEN APSLEGPERQ DLFQHEFEFG QNMESIQSKK AKSHGSMSSK LETSSTTHMN
0801: AEYVSLEDLA PLAMDKIEAL SIEGLRIQTG MSDEDAPSNI SAQSIGKFSA FEEQKVNLGG AVGLEGAGGL KLLDIKDNGD DVDGLMGLSL TLDEWMRLDS
0901: GEIDDEDEIS ERTSKLLAAH HAISTDLFQG RSKGEKRRGK SRKCGLLGNN FTVALMVQLR DPLRNYEPVG TPMLALVQVE RVFVPPKPKI NSKVSEVRNN
1001: NEDDDDESAP PKNDSNVDIK EEKIPEVEPI AQYKITEVHV AGLKSEQGKK KLWGSTTQEQ SGSRWLVANG MGKKNKHPFM KSKASNKSSK EAASSATTTV
1101: QLGDTLWSIS SRVHGTGTKW KDIAALNPHI RNPNVILPNE TIRLR
0001: MSKVNSEESS SSQKLLKEVE KISEALYVNK NPRGSVAGSN KTPTKPLSRS NLAEPKEKKS FWNWPLRAIN HVRNRRFNCC FSAQVHSIEG LPPIFQDLSL
0101: TVHWKRRDES LSTRPAKVSN GRAEFKDKLT HTCSVYGSRS GPHHSAKYEA KHFLLYVSLV GSPEIDLGKH RMDLTKLLPL TLEELQDEKS SGKWSTTFQL
0201: SGKANGATLS MSFGYTVVGD TRNPASSGST QNFRSSSNVK QTSNNTGLTR AISAKSSLGN GKSASRRYDH SIVNRESHPL SQNMEEIKDL HEILPAVQSD
0301: LGSSVNTLYQ KFDEEKVDPA NESQFEFDVV TKHIEPVESI SHEKEDANAL QSELVTGNET VVPFEEIKKA GEVPTAGSDE VGAENFPLEE PLVNGNETDV
0401: PFELLKKAGE VPTAGRDEVG TEILPPEEPL VNGNETDVPF EELMITGEAS IARSEEAVEI VTEELAPEEG NKISPKNEES VVPKDAEEVM NGEKDLKEMI
0501: MKDLESALKS VEMLEATASE DEEDRKKHGD KDKYFITPMK ETVPSCSRDV AESVACEFLD MLGIEHSPFG LSSESEPESP RERLLREFEM ETLAAGSLFD
0601: FSIEGDDPQL ECDENFPNEY ESDFEEGFDL ASLVHDIEEE YQLEAQARVS HPRAKMLEGL ETESLMREWG MNENTFQNSP PHNGRDAFHP ADFPVKEPFD
0701: LPPLGDGLGP VVQTKNGGFL RSMNPLLFRN SKAGGSLIMQ VSTPVVVPAE MGSGIMEILQ KLATAGIEKL SMQANKVMPL DDITGKTMEE VLWETSPTID
0801: IGDRDHVSER ESGDASGFVR GGERRTSFAA KPKKFGSSSG NNNFDSEYVS LEDLAPLAMD QIEALSLEGL RIQSGMSDED APSDITAQSI GDISAFQGKS
0901: GCVGLEGAAG LQLLDIKDDG DDDDDGLMGL SLTLDEWMKL DSGDIGDEDE INERTSKILA AHHANPLNFI RKGSKGEKRK GKKGRKCGLL GNTFTVALMV
1001: QLRDPLRNYE PVGAPMLSLI QVERLFVPPK PKIYSTVSEL KKTDEEEEAD ASDAKKEEKP MEEQGIPQYK ITEVHLTGMK SETDKKPWGI TTQQQQVQSG
1101: SRWLMANGMG KGNNKLPLMK PKLGSAKPGD KLWSVSGSGS KWKELGKMGK SNTHIRNPNV IMPK
0101: TVHWKRRDES LSTRPAKVSN GRAEFKDKLT HTCSVYGSRS GPHHSAKYEA KHFLLYVSLV GSPEIDLGKH RMDLTKLLPL TLEELQDEKS SGKWSTTFQL
0201: SGKANGATLS MSFGYTVVGD TRNPASSGST QNFRSSSNVK QTSNNTGLTR AISAKSSLGN GKSASRRYDH SIVNRESHPL SQNMEEIKDL HEILPAVQSD
0301: LGSSVNTLYQ KFDEEKVDPA NESQFEFDVV TKHIEPVESI SHEKEDANAL QSELVTGNET VVPFEEIKKA GEVPTAGSDE VGAENFPLEE PLVNGNETDV
0401: PFELLKKAGE VPTAGRDEVG TEILPPEEPL VNGNETDVPF EELMITGEAS IARSEEAVEI VTEELAPEEG NKISPKNEES VVPKDAEEVM NGEKDLKEMI
0501: MKDLESALKS VEMLEATASE DEEDRKKHGD KDKYFITPMK ETVPSCSRDV AESVACEFLD MLGIEHSPFG LSSESEPESP RERLLREFEM ETLAAGSLFD
0601: FSIEGDDPQL ECDENFPNEY ESDFEEGFDL ASLVHDIEEE YQLEAQARVS HPRAKMLEGL ETESLMREWG MNENTFQNSP PHNGRDAFHP ADFPVKEPFD
0701: LPPLGDGLGP VVQTKNGGFL RSMNPLLFRN SKAGGSLIMQ VSTPVVVPAE MGSGIMEILQ KLATAGIEKL SMQANKVMPL DDITGKTMEE VLWETSPTID
0801: IGDRDHVSER ESGDASGFVR GGERRTSFAA KPKKFGSSSG NNNFDSEYVS LEDLAPLAMD QIEALSLEGL RIQSGMSDED APSDITAQSI GDISAFQGKS
0901: GCVGLEGAAG LQLLDIKDDG DDDDDGLMGL SLTLDEWMKL DSGDIGDEDE INERTSKILA AHHANPLNFI RKGSKGEKRK GKKGRKCGLL GNTFTVALMV
1001: QLRDPLRNYE PVGAPMLSLI QVERLFVPPK PKIYSTVSEL KKTDEEEEAD ASDAKKEEKP MEEQGIPQYK ITEVHLTGMK SETDKKPWGI TTQQQQVQSG
1101: SRWLMANGMG KGNNKLPLMK PKLGSAKPGD KLWSVSGSGS KWKELGKMGK SNTHIRNPNV IMPK
Arabidopsis Description
PMIR1Protein PLASTID MOVEMENT IMPAIRED 1-RELATED 1 [Source:UniProtKB/Swiss-Prot;Acc:F4K5K6]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.