Factsheet for VIT_11s0016g01610.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	mitochondrion, nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os01t0714100-01	Rice	cytosol	54.76	34.94
VIT_11s0016g01690.t01	Wine grape	cytosol	74.6	15.99
Solyc05g032750.2.1	Tomato	nucleus	64.68	14.76
GSMUA_Achr1P05230_001	Banana	nucleus	62.3	14.34
CDY16548	Canola	nucleus	58.33	14.26
CDY45081	Canola	nucleus	59.92	14.23
Bra020112.1-P	Field mustard	nucleus	59.92	14.14
PGSC0003DMT400028119	Potato	cytosol	63.89	14.06
KRH12468	Soybean	cytosol	61.51	13.86
HORVU3Hr1G067440.1	Barley	plastid	54.37	13.77
Solyc07g041180.2.1	Tomato	nucleus	60.32	13.45
PGSC0003DMT400053992	Potato	nucleus	60.32	13.39
AT5G20610.1	Thale cress	nucleus	60.71	13.14
Zm00001d043666_P001	Maize	nucleus	58.73	12.93
OQU87417	Sorghum	nucleus	59.13	12.87
TraesCS3D01G248600.1	Wheat	nucleus	57.94	12.86
Bra002315.1-P	Field mustard	nucleus	59.13	12.58
KRH37453	Soybean	cytosol	60.32	12.43
Zm00001d011716_P001	Maize	nucleus	55.95	12.28
CDX92449	Canola	nucleus	46.83	12.04
TraesCS3B01G277400.1	Wheat	cytosol	56.75	11.81
KRH19252	Soybean	nucleus	36.11	11.64
Zm00001d044668_P001	Maize	extracellular	33.33	11.1
VIT_04s0008g01460.t01	Wine grape	nucleus	52.38	10.96
Zm00001d042647_P001	Maize	mitochondrion	7.54	10.11
VIT_18s0122g00830.t01	Wine grape	nucleus	21.03	6.17
KRH02657	Soybean	nucleus	2.78	3.85
Zm00001d037913_P001	Maize	plastid	3.17	3.62
Zm00001d020517_P001	Maize	mitochondrion	6.35	3.31

Protein Annotations

ArrayExpress:VIT_11s0016g01610	EMBL:FN595756	EnsemblPlants:VIT_11s0016g01610.t01	EnsemblPlantsGene:VIT_11s0016g01610	PANTHER:PTHR33414	PANTHER:PTHR33414:SF1
ProteinID:CCB51425	ProteinID:CCB51425.1	SEG:seg	UniParc:UPI000210848F	UniProt:F6HGU9	MapMan:20.5.6

Description

No Description!

Coordinates

chr11:-:1299146..1300520

Molecular Weight (calculated)

27549.0 Da

IEP (calculated)

6.149

GRAVY (calculated)

-0.363

Length

252 amino acids

Sequence
(BLAST)

001: MEEAGQDVTG GQKTVKGKSS ASRSNKLNSS SLDSDVGSEY VSLEDLAPLA MDKIEALSIE GLRIQTGMVE EDAPSNVSAQ SIGEISALKG QGVNITGSLG
101: LEGAAGLQLL VIKDIDDDLD GLMGLSLTLD EWMRLESGEI GDKDQISERT SKILAAHHTN SLEFIRGGSK GERRRGRGSG RKCGLLGNNF TVALMVQLRD
201: PLRNYEPVGT PMLALIQVER VFHQSQKYTV QFHWWGTVKK RMMSLCQWQR RI

Best Arabidopsis Sequence Match ( AT5G20610.1 )
(BLAST)

0001: MSKVNSEESS SSQKLLKEVE KISEALYVNK NPRGSVAGSN KTPTKPLSRS NLAEPKEKKS FWNWPLRAIN HVRNRRFNCC FSAQVHSIEG LPPIFQDLSL
0101: TVHWKRRDES LSTRPAKVSN GRAEFKDKLT HTCSVYGSRS GPHHSAKYEA KHFLLYVSLV GSPEIDLGKH RMDLTKLLPL TLEELQDEKS SGKWSTTFQL
0201: SGKANGATLS MSFGYTVVGD TRNPASSGST QNFRSSSNVK QTSNNTGLTR AISAKSSLGN GKSASRRYDH SIVNRESHPL SQNMEEIKDL HEILPAVQSD
0301: LGSSVNTLYQ KFDEEKVDPA NESQFEFDVV TKHIEPVESI SHEKEDANAL QSELVTGNET VVPFEEIKKA GEVPTAGSDE VGAENFPLEE PLVNGNETDV
0401: PFELLKKAGE VPTAGRDEVG TEILPPEEPL VNGNETDVPF EELMITGEAS IARSEEAVEI VTEELAPEEG NKISPKNEES VVPKDAEEVM NGEKDLKEMI
0501: MKDLESALKS VEMLEATASE DEEDRKKHGD KDKYFITPMK ETVPSCSRDV AESVACEFLD MLGIEHSPFG LSSESEPESP RERLLREFEM ETLAAGSLFD
0601: FSIEGDDPQL ECDENFPNEY ESDFEEGFDL ASLVHDIEEE YQLEAQARVS HPRAKMLEGL ETESLMREWG MNENTFQNSP PHNGRDAFHP ADFPVKEPFD
0701: LPPLGDGLGP VVQTKNGGFL RSMNPLLFRN SKAGGSLIMQ VSTPVVVPAE MGSGIMEILQ KLATAGIEKL SMQANKVMPL DDITGKTMEE VLWETSPTID
0801: IGDRDHVSER ESGDASGFVR GGERRTSFAA KPKKFGSSSG NNNFDSEYVS LEDLAPLAMD QIEALSLEGL RIQSGMSDED APSDITAQSI GDISAFQGKS
0901: GCVGLEGAAG LQLLDIKDDG DDDDDGLMGL SLTLDEWMKL DSGDIGDEDE INERTSKILA AHHANPLNFI RKGSKGEKRK GKKGRKCGLL GNTFTVALMV
1001: QLRDPLRNYE PVGAPMLSLI QVERLFVPPK PKIYSTVSEL KKTDEEEEAD ASDAKKEEKP MEEQGIPQYK ITEVHLTGMK SETDKKPWGI TTQQQQVQSG
1101: SRWLMANGMG KGNNKLPLMK PKLGSAKPGD KLWSVSGSGS KWKELGKMGK SNTHIRNPNV IMPK

Arabidopsis Description

PMIR1Protein PLASTID MOVEMENT IMPAIRED 1-RELATED 1 [Source:UniProtKB/Swiss-Prot;Acc:F4K5K6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.